Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g00541 ATGGACCCTAAGGATACGCAGGTTGGCAAGCCACCCATCAACCAGCGAAGAGGGAAGGCTGGTTTACCCAAGCCTTCTGTTGTTCAGGATGTTCAACCTGGTTTGCCAACGCCTTCTGTTGCTGCGAAAGTCAAACCACATGATGCACCTAGCCCAACCGCTGTGTCCGCACAAGTCCATCCTGACATTGCAACGCCTGACATTGCAGTGCTAACACCCAACTTGGTCCAGGTTGTCAGCACTCCTGATCATACCGACGCTTCCCCGGCTGTAGTTGATAAACCAGTTCAAAGGACTTATGACCCAGTCGCTAATGTCAGCAAAAGACGGGAAACTTGGCGCCTGGGTGTTATCATTGATGACATCTGGACTGTTTACAAGGGAGAAACTGAAGATCATGTTGAATTGTTAATCAGGGATAAGCAGGGGGACACGATTCAAGCTACCATCATGGGTGAAGAGATATCCACTTGGAAACCTGTATTGGTTGAAGGGAATACATATTATATGCGGAATTTCCGTGTATATGATAATACTTCTGACTATAAGGTCTCTCCACACAAGTTTCGCTTGACATTTGTCAATGCTACCAGAGTGGAGCCCGCTGAGCTCGCTGGAATCCCACCAACCATGTTCAAGTTCAAGGATTTCTCAGAAATCTTGTCTGGCCAATACAAATCAGATCACTTGATTGATGCTATTGGCGTGATCCAGGAAATTCGGAAAGTTGTCCCTGCTAACTCTACAAGAAAAGCAAACGTCGCATTTACTATCAAGGATCTGAGTGGTGTTATGGTTGATTGCACCCTCTGGGACTCTTTGTCTGTTGAATTCATAACACATTACACCCAACACACTGAGACTGGACCTGTCGTTGTGATTATCAAACATGCCCGCATCAAAGAACCACAAGGCATTTATCCCATCCAGTTGACTAATGTATGGAATGGTACAAAGCTGTTGTGGGATCCAGCCATACCTGACATTCGTACTTTCGTTACAAGCATGCCCAAAGAACTTGCTCTCTCAACCCAACACTCGGCTTCCTCCAATACAACTCAGTTCTATAGCCAATCATCTGCTGGGTCGCAGTTCAACTCTGACGAAAATTTTATGAAACAAGCGCGTATCGTCAATTTGTCTGACATGAAGAAACTCAAAGTGGACACTTATTGTGTTACGGTCGTCACAACTGATCAAATAAAGGTATCTAACCAAGGATGGTTTTACTATGGCTGCCCTGATTGTGGACTCAAGGCTGATGGAAAAGAACCTCCATTCATTTGTAAGAAGGGCCACCAGACAAACAACCCCCTCATTAAGTACAAATTAGATGTTGAGGTTTGCGATGATACTGATACGGCCAAGTTCGTCTTCTGGGACAGTGCGCTCGATGAATTAGTTGGTTTAACTGCTGCTGGACTACTTGAACACCAAAAAAAGCTTGGTGTAAGCGATCCGCAGGAATATCCACAAAAACTTGAGGATCTCATGCACAGGAAGTTTGCTTTCCGCATCAAATGGCAACCAGGTTGGGGAGGCCAAGGAACTGTATCCCTCTGTCGGGATAGCATAGAATTGATTGATAAAATACAAGAACATCTACCCGCTGCAGAGAGTCAGTGCAAAGACATCGAAGCCATTGAAGAAAATAATGAAGACACTGCGGGGGTTAATTCCTCATCCCCGATCCAGCACTTTACTTCATCTGACATCGAGAAGTTTGCTGCCTTAGATGATGCCATGCTATCAACTCCGAATTCATCCGCATCTGCTGACACTGACAATTCAGCATCTAATTTAAAAACTCCGGCCAAAAGAAATGCTTCAAAACACACCCAAATTGATCCATCAAATCTTGATTCCCAGTTCTCATCAACCAGGGCTGGAAAACTTATTAAGAAGGAGAAGCTCTAA 1917 0.4481 MDPKDTQVGKPPINQRRGKAGLPKPSVVQDVQPGLPTPSVAAKVKPHDAPSPTAVSAQVHPDIATPDIAVLTPNLVQVVSTPDHTDASPAVVDKPVQRTYDPVANVSKRRETWRLGVIIDDIWTVYKGETEDHVELLIRDKQGDTIQATIMGEEISTWKPVLVEGNTYYMRNFRVYDNTSDYKVSPHKFRLTFVNATRVEPAELAGIPPTMFKFKDFSEILSGQYKSDHLIDAIGVIQEIRKVVPANSTRKANVAFTIKDLSGVMVDCTLWDSLSVEFITHYTQHTETGPVVVIIKHARIKEPQGIYPIQLTNVWNGTKLLWDPAIPDIRTFVTSMPKELALSTQHSASSNTTQFYSQSSAGSQFNSDENFMKQARIVNLSDMKKLKVDTYCVTVVTTDQIKVSNQGWFYYGCPDCGLKADGKEPPFICKKGHQTNNPLIKYKLDVEVCDDTDTAKFVFWDSALDELVGLTAAGLLEHQKKLGVSDPQEYPQKLEDLMHRKFAFRIKWQPGWGGQGTVSLCRDSIELIDKIQEHLPAAESQCKDIEAIEENNEDTAGVNSSSPIQHFTSSDIEKFAALDDAMLSTPNSSASADTDNSASNLKTPAKRNASKHTQIDPSNLDSQFSSTRAGKLIKKEKL 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g00541 638 CDD RPA1_DBD_A_like 114 199 - -
Trre14g00541 638 Pfam Replication factor-A C terminal domain 403 508 IPR013955 -
Trre14g00541 638 SUPERFAMILY Nucleic acid-binding proteins 99 202 IPR012340 -
Trre14g00541 638 Gene3D - 354 534 IPR012340 -
Trre14g00541 638 SUPERFAMILY Nucleic acid-binding proteins 212 339 IPR012340 -
Trre14g00541 638 Gene3D - 206 344 IPR012340 -
Trre14g00541 638 MobiDBLite consensus disorder prediction 584 638 - -
Trre14g00541 638 Gene3D - 100 203 IPR012340 -
Trre14g00541 638 Pfam Domain of unknown function DUF223 135 230 IPR003871 -
Trre14g00541 638 SUPERFAMILY Nucleic acid-binding proteins 389 510 IPR012340 -
Trre14g00541 638 MobiDBLite consensus disorder prediction 584 629 - -
Trre14g00541 638 MobiDBLite consensus disorder prediction 1 55 - -
Trre14g00541 638 CDD RPA1_DBD_B_like 232 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g00541 Trre-Chr14 4368800 4372965 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g00541 3 507 Core DNA Replication Machinery Family AT5G45400 18.609 1.52e-11 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g00541 - - tpra:123884216 690.263