Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g00525 ATGGATTCTTCTGTGTTGACTTCTTACTTCAACAACTTCCGAACCACCGCGAACTCTTTTCTCTCTCAATACGAACCTCTCACCCTGGTTCTAGTTCCTCTATTCTCTCTCTTTCTCGCAAACGTGATTCGTTCGTTTTTCAGTGTTATTCATGATAAAGGACTCAAAGCCACTGTACTAGGGTTCTTCATGAACTTCATCAAATTGATCCCTGGTGTGAAGAGTTATATAGATGCTGAAAAACAGAAGGTCGTGGATAAGTTACAGTCTGATGGTAAATCTAAAAGAGAAGGTTGGAAGACAGAGTTGCCAAGTACAGGGTTGGGGACATCTGTTCTTGAGAAAATGAGTGAGGAGAAAAGAAATGATGCAGTTTGGCAAGGCAAATGCTCTGGTACAGTCTACATTGGAGGAAGTGAGTCTAGTGCACATTTTTCTGTCATAAATGAGGCCTGCTCAATGTTTGCACATACCAATCCCTTGCATTTGGATGTATTCCAGAGTGTTGTACGCTTTGAGGCAGAAGTGGTTGCAATGACAGCGGCCCTTCTTGGAAGTAAAGAAAAGACATCTGGTGGACAAATATGTGGCAATATGACATCAGGTGGGACTGAAAGTATATTATTAGCCGTTAAATCATCTCGCGACTACATGAAATCCAAGAAAGGAATTACAAGACCTGAAATGATAATCCCTGAGTCTGGTCACTCAGCATATGACAAAGCTGCACATTATTTTAACATAAAACTATGGCGTGTTCCAGTTAACAAAAAATTTCAAGCCGATGTGAAAGCAATTCGAAGTCATATTAACAAAAATACCATTTTGATTGTTGGATCTTCTCCTGGGTTTCCTCATGGGATAATAGACCCCATTGAAGAACTTGGTCAACTAGCATCAAGCTTTGGCATTTGTTTTCACGTGGACCTTTGCCTTGGTGGCTTTGTATTACCTTTTGCTCGTGAGCTTGGGTACCACATTCCACCTTATGATTTTTCTGTTAAAGGGGTTACTTCAATATCAGCGGATGTGCATAAATATGGGTTAGCTCCCAAAGGAACAAGTGTAGTTCTATATAGGAACCATGAAATCAGAAAGCATCAATTTGTTGCAGTTACTGAGTGGTCCGGTGGGTTGTATGTATCTCCAACCATAGCTGGAAGCAGACCTGGAAGCCTTATTGCTGGTGCATGGGCAGCAATGATGTCTCTAGGGAAAGCAGGTTACTTGGAAAATACTAAAGCAATTATGGAAGGATCAAAAAGACTACAAAAAGGCATAGAGGAGATTCCTGAGTTATTTATCATTGGAAAACCCGATATGACAATTGTGGCTTTTGGATCAAATGTTCTCGATATATTTGAAGTCAATGATATCATGTCATCCAAAGGTTGGCATTTGAATGCATTGCAGAGACCCAACAGCATCCATATCTGTGTGACACTACAACATGTACCAGTAATCGAGGACTTTATAAAGGATTTAAAGGAATCTGTGAATACTGTGAAAGAAAATCCAGGTCCAATAAGTGGAGGACTAGCACCTATATATGGAGCCGCCGGGAAGATGCCAGATAGAGGAATGGTCCAGGAATTGCTGGTCGATTTCATGGATGGCACCTGCTAG 1626 0.4102 MDSSVLTSYFNNFRTTANSFLSQYEPLTLVLVPLFSLFLANVIRSFFSVIHDKGLKATVLGFFMNFIKLIPGVKSYIDAEKQKVVDKLQSDGKSKREGWKTELPSTGLGTSVLEKMSEEKRNDAVWQGKCSGTVYIGGSESSAHFSVINEACSMFAHTNPLHLDVFQSVVRFEAEVVAMTAALLGSKEKTSGGQICGNMTSGGTESILLAVKSSRDYMKSKKGITRPEMIIPESGHSAYDKAAHYFNIKLWRVPVNKKFQADVKAIRSHINKNTILIVGSSPGFPHGIIDPIEELGQLASSFGICFHVDLCLGGFVLPFARELGYHIPPYDFSVKGVTSISADVHKYGLAPKGTSVVLYRNHEIRKHQFVAVTEWSGGLYVSPTIAGSRPGSLIAGAWAAMMSLGKAGYLENTKAIMEGSKRLQKGIEEIPELFIIGKPDMTIVAFGSNVLDIFEVNDIMSSKGWHLNALQRPNSIHICVTLQHVPVIEDFIKDLKESVNTVKENPGPISGGLAPIYGAAGKMPDRGMVQELLVDFMDGTC 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g00525 541 Gene3D - 138 405 IPR015421 GO:0003824
Trre14g00525 541 FunFam sphingosine-1-phosphate lyase 1 141 405 - -
Trre14g00525 541 Gene3D - 101 538 - -
Trre14g00525 541 Gene3D Aspartate Aminotransferase, domain 1 110 504 IPR015422 GO:0003824
Trre14g00525 541 PANTHER - 39 541 - -
Trre14g00525 541 SUPERFAMILY PLP-dependent transferases 77 503 IPR015424 -
Trre14g00525 541 FunFam Sphingosine-1-phosphate lyase 1 502 540 - -
Trre14g00525 541 FunFam Sphingosine-1-phosphate lyase 1 395 504 - -
Trre14g00525 541 Pfam Pyridoxal-dependent decarboxylase conserved domain 166 446 IPR002129 GO:0016830|GO:0019752|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g00525 Trre-Chr14 4261825 4269858 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g00525 157 499 Calmodulin-binding Proteins AT5G17330 24.444 6.40e-22 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g00525 K01634 - gmx:100794395 964.911