LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre14g00519	ATGGCTTCCACAACTACACCTAGGTCTTTTCTTCAAGCTGTCGCAACGGAAGAGGTTGCAACTCCTCTTAGAGCCGTCCAGATGGAAGGATTGGTTATCCTGAAGATAATTAAGCATTGTAAGGACCATTCACCTTCTTTAGTCACTGGACAACTTCTTGGGTTGGATGTTGGTAGTGTTCTTGAAGTTACTAACTGCTTCCCTTTTCCGATGAGGGAGGAGGATGAGGAAATTGAAGCTGACGGTGCCAATTACCAGCTTGAAATGATGAGGTGCTTGAGGGAAGTTAATGTGGACAATAATACTGTTGGATGGTACCAGTCTACATTGCTTGGCTCCTATCAAACCGTGGAGCTGATTGAAACCTTTATGAATTACCAGGAGAATATTAGACGCTGTGTCTGCATAATATATGACCCATCAAGGGCTGATCAAGGTGTTCTTGCTCTGAAGGCCTTGAAGCTCTCAGACTCATTCATGGAACTGTACCGCAGCAATAATTTTATTGGCGAGAAATTGAGGGAGAAGAACTTATCATGGGTGGATATCTTTGAGGAAATACCTATCAAAGTTTCAAATTCTGCCCTTATCAGTGCTTTTATGACAGAGCTGGAACCTGAGACTCCAGTAACCCAGTGTGATTACGATCGTCTGCAACTGTCAACCAGTTCACTAATGGAGAGAAATATGGAATTTTTGATTGAATGCATGGATGACTTATCAGTAGAACAACAAAAGCTCCAATTCCACTATCGTAGCTTGTCTCGTCAACAGGCTCAGCAGCAAGCATGGCTTCAGAAGAGAAGGGCGGAGAACGCGACACGCAGAGCTGCTGGGGAGGAGCCTTTACCCGAGGAAGATCCTGCAAACCCCATTTTCAAGCCGCTCCCCGAGCCATCACGGCTAGAGAGCTTTCTCATAACAAATCAAATTTCCAACTATTGCAACCAAATCAACGGGGTTGCAGGTCAAAGCTTTAACAGACTCTATTTGATGAAGGCTTTGCATGAGGAGTAA	1017	0.4444	MASTTTPRSFLQAVATEEVATPLRAVQMEGLVILKIIKHCKDHSPSLVTGQLLGLDVGSVLEVTNCFPFPMREEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTLLGSYQTVELIETFMNYQENIRRCVCIIYDPSRADQGVLALKALKLSDSFMELYRSNNFIGEKLREKNLSWVDIFEEIPIKVSNSALISAFMTELEPETPVTQCDYDRLQLSTSSLMERNMEFLIECMDDLSVEQQKLQFHYRSLSRQQAQQQAWLQKRRAENATRRAAGEEPLPEEDPANPIFKPLPEPSRLESFLITNQISNYCNQINGVAGQSFNRLYLMKALHEE	338

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre14g00519	338	Hamap	Eukaryotic translation initiation factor 3 subunit H [EIF3H].	21	338	IPR027524	GO:0003743\|GO:0005737\|GO:0005852
	Trre14g00519	338	Pfam	JAB1/Mov34/MPN/PAD-1 ubiquitin protease	24	127	IPR000555	GO:0005515\|GO:0008233\|GO:0008237
	Trre14g00519	338	FunFam	Eukaryotic translation initiation factor 3 subunit H	5	214	-	-
	Trre14g00519	338	PANTHER	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED	20	322	-	-
	Trre14g00519	338	SMART	pad1_6	25	158	IPR000555	GO:0005515\|GO:0008233\|GO:0008237
	Trre14g00519	338	MobiDBLite	consensus disorder prediction	266	295	-	-
	Trre14g00519	338	Pfam	C-terminal region of eIF3h	145	337	IPR045810	-
	Trre14g00519	338	ProSiteProfiles	MPN domain profile.	26	159	IPR037518	-
	Trre14g00519	338	CDD	MPN_eIF3h	24	287	IPR027524	GO:0003743\|GO:0005737\|GO:0005852
	Trre14g00519	338	Gene3D	Cytidine Deaminase, domain 2	2	215	-	-
	Trre14g00519	338	MobiDBLite	consensus disorder prediction	269	283	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre14g00519	Trre-Chr14	4212550	4216292	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre14g00519	89	337	Eukaryotic Initiation Factors Gene Family	AT1G10840	83.133	3.31e-155	433

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre14g00519	K03247		-	gmx:100795273	623.624