Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g00494 ATGACCATGGTTCCTTCTCAAAGCAACAAACAAAATTACAAAACTATTAATGGTGATTATGTTTTCTACAACAACAATACAACTACAAGTGCTATGAACCAATTTCAATTTGTTGAAGACTACAACAACTACAATAATTGTTTAAGATCTGAATTTTTGTTGAGGCACATGGCTGAAGAAGAGGAATCATCATCAAGACTCAACACTATAACCACTACTCATCACAACGAATCTGAACCCGAACCAGAAACTATTTCTACTTCAAAGGAAGACGAAGAACAAGAACAAGAAAGAGAAGCGAATAACAATAATACCAACAACAATAATTGGCTTCAGTTAAGCATAGGTAACACGGTCGTGACAACAATAACAAAACACGACCGTGATCACAACCAAACTCCAACAAGCAGTTCAGGCTTATTGGAGCTTGAGTTATTACCAACAAATTGGACTTCTTCACGGCCCAATTTAGAGCAACCATCGACCAGAGGTTGCTCAACTTTTAATTCTTCTTTGTTTTTAGAACAAACAACATCCTCCTCTTCTTCGTCATCGATGTCCATATCTATGTCCATGCCTAGCGGGCCAACATCGTATGGTCATCAACAACAACATCAACATCTAGTACCACATAACTGGGCATTTGGTCCATTACAACTACCACATTCTATGGCAATTATGCATTCTTCTACATCTTATATTCCCTCTTTATCTTCTTCGTCGCAATCTTGTTCTTCTTTAAGGCCTTCTTTAGGACCTAATTATTATCCTCAATATCATCATGCATCACCCTTTTATTTTCCTTCATCATCTTCATCTTCTTCTGGATTTGATCAATTTGATGTGGCTGGACCTAGCTCATCATCTCATATCGCTTTTCGCGTAGTTGATCCCCCTCGTAGACCTCATTCCGGAATTTGGTTTATGCTACAAGCCTCACAAAACCAAGTGAAAGAACCATGCTTGCCACAAATACCTAAGAACTATCTTAGAATCAAAGATGGAAGAATGACAGTTCGGTTGCTATTCAAGTATTTGGTTAGTAAACTCAAACTGGAGAGCGAATCAGAGATAGAGATAACATGCAGAGGACAACAACTTTTACCTTTCTTGACGTTGCAGCATGTGAGGGATAATATTTGGATACCAAGGGACACCACAACAAGGCCTTTGCTTTCAGATTCCTCAACAGCAGATCATGTTATGGTGCTTCATTATGGTAGAAGCACTTCTTGA 1236 0.3851 MTMVPSQSNKQNYKTINGDYVFYNNNTTTSAMNQFQFVEDYNNYNNCLRSEFLLRHMAEEEESSSRLNTITTTHHNESEPEPETISTSKEDEEQEQEREANNNNTNNNNWLQLSIGNTVVTTITKHDRDHNQTPTSSSGLLELELLPTNWTSSRPNLEQPSTRGCSTFNSSLFLEQTTSSSSSSSMSISMSMPSGPTSYGHQQQHQHLVPHNWAFGPLQLPHSMAIMHSSTSYIPSLSSSSQSCSSLRPSLGPNYYPQYHHASPFYFPSSSSSSSGFDQFDVAGPSSSSHIAFRVVDPPRRPHSGIWFMLQASQNQVKEPCLPQIPKNYLRIKDGRMTVRLLFKYLVSKLKLESESEIEITCRGQQLLPFLTLQHVRDNIWIPRDTTTRPLLSDSSTADHVMVLHYGRSTS 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g00494 411 MobiDBLite consensus disorder prediction 62 112 - -
Trre14g00494 411 Gene3D - 300 392 - -
Trre14g00494 411 MobiDBLite consensus disorder prediction 76 99 - -
Trre14g00494 411 PANTHER RING FINGER PROTEIN 1 409 IPR044171 GO:0007275
Trre14g00494 411 MobiDBLite consensus disorder prediction 179 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g00494 Trre-Chr14 4010887 4023987 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g00494 322 406 C3H Transcription Factor Family AT3G23060 40.449 3.95e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g00494 - - lja:Lj1g3v3138970.1 381.719