Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g00488 ATGGTTTCTGCTCTCTCTCAAGTCATTGGAACATCTACCAATAATCATAATCCTCACATGGCACAATCAACATCAACTACCATGGTCAATGATGAATCTCAAACACCTCAACCTCTTCTAGATCAAGAGACCCCAAAGAAACCACACTATAGAGGAGTGAGAATGAGACCATGGGGAAAATGGGCAGCTGAAATACGTGACCCAAAAAAAGCAGCTAGAGTTTGGTTAGGAACATTTGAAACTGCTGAAGATGCAGCTATTGCATATGACAAAGCAGCACTTGAATTCAAAGGCACAAAAGCTAAACTTAATTTCCCTGAAAGAGTTGTTCAACATCAATCCAACAACAATAATAATTCTAGTGCCATTCAACAAAGTGGTTCTGTTTCTAATAATAATAATGTTGATCACCAAGTTTTTCCAAACCTTTTTCAATATGCTCAGATTCTTTCTAGTGATGCTGAATTTCCCTATTATGCTTCTCATCTTTTCAATCAACAACAACAACAAGGAGATCGTCGTCCGCCAGGTCAGTAG 537 0.3836 MVSALSQVIGTSTNNHNPHMAQSTSTTMVNDESQTPQPLLDQETPKKPHYRGVRMRPWGKWAAEIRDPKKAARVWLGTFETAEDAAIAYDKAALEFKGTKAKLNFPERVVQHQSNNNNNSSAIQQSGSVSNNNNVDHQVFPNLFQYAQILSSDAEFPYYASHLFNQQQQQGDRRPPGQ 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g00488 178 FunFam Ethylene-responsive transcription factor 2 48 107 - -
Trre14g00488 178 Gene3D AP2/ERF domain 49 108 IPR036955 GO:0003700|GO:0006355
Trre14g00488 178 ProSiteProfiles AP2/ERF domain profile. 49 106 IPR001471 GO:0003700|GO:0006355
Trre14g00488 178 MobiDBLite consensus disorder prediction 1 52 - -
Trre14g00488 178 CDD AP2 48 107 IPR001471 GO:0003700|GO:0006355
Trre14g00488 178 PRINTS Ethylene responsive element binding protein signature 72 88 IPR001471 GO:0003700|GO:0006355
Trre14g00488 178 PRINTS Ethylene responsive element binding protein signature 50 61 IPR001471 GO:0003700|GO:0006355
Trre14g00488 178 MobiDBLite consensus disorder prediction 112 134 - -
Trre14g00488 178 Pfam AP2 domain 48 98 IPR001471 GO:0003700|GO:0006355
Trre14g00488 178 PANTHER DNA-BINDING DOMAIN 26 142 IPR044808 GO:0003700|GO:0009873
Trre14g00488 178 SMART rav1_2 49 112 IPR001471 GO:0003700|GO:0006355
Trre14g00488 178 MobiDBLite consensus disorder prediction 1 41 - -
Trre14g00488 178 SUPERFAMILY DNA-binding domain 49 107 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g00488 Trre-Chr14 3945519 3947807 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g00488 1 164 AP2-EREBP Transcription Factor Family AT5G13330 49.153 4.30e-46 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre14g00488 AP2 1.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g00488 - - mtr:11443305 257.299