Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g00392 ATGTTGGAGCACGAATTCCTCACCACTACCTCCGCCACCGGCACCGTTAGGTCTGCGGTCACGTGGCCACGTACATGTGACACGTGCCGCTCTGCTCCATGCGCGGTATTCTGCCGCGCAGACTCAGCGTATTTATGCGCTGGGTGTGATGCACAGATCCACGCAGCAAACCGAGTAGCCTCGAGGCACGAACGCGTTTGGGTCTGTGAGGCCTGCGAGCGTGCCCCGGCGGCTTTTCTTTGTAAAGCTGATGCTGCTTCCCTTTGCTCCTCTTGTGATGCTGATATCCACTCTGCTAACCCTCTAGCCAGCCGCCATCAACGTGTCCCGATTCTTCCAATTTCCGGCTACCTTTACGGTCCTCCAACAACCCTTTTAGGTGCCGATGATGAAGGCTTTGTCGGTGGTGGTCGTGAGGTGGAGGAAGAGGAGGATGAAGGTATGGAAGATGAAGATGAAGCAGCTTCATGGCTTTTGTTGAATCCTCTAAAGAATAGCAATAACAATAAGGGTAATAATGGATTTTTGTTTAGTGGTGAGGTTGATGAGTATTTGGATCTTGTGGATTGTAATTCTTGTGGTGGTGGTGATAACACTTTCACTACCAATACTAATACTACAACTACAACTACTACTCATCATGATGAGTATAGTCAACAACAACAAGATCATTATGGTGTTCCTCAAAAGAGCTATGTTGGGGATAGTGTTGTTCCTGTTCAACAACAGCAGGTACAGAATTTTCAACTTGGGTTGGAGTTTGAATCTTCCAAAGCTGGATTCAGTTACAATGGTGGTTCTATAAGTCAAAGTGTATCAGTTTCTTCAATGGATGTTGGTGTTGTACCAGAATCAACAATGAGAGATGTCTCAATGAACTATTCAAGACCTTCAAAAGGAACAATTGACCTATTTTCAGGTCCTCCTATTCAAATGTCTTCTCATTTCTCACCAATGGATAGAGAAGCCAGAGTCCTAAGGTATAGAGAGAAAAAGAAAACAAGAAAATTTGAGAAGACAATTAGGTATGCCTCAAGGAAAGCCTATGCAGAAACTCGACCGCGTATAAAAGGTCGATTCGTTAAGCGAACAGATGTAGATGCTGAAGTTGATCAAATGTTTCCCACATCACTAATTACAGATGTTGGATATGGCATTGTTCCCTCATTCTGA 1173 0.4476 MLEHEFLTTTSATGTVRSAVTWPRTCDTCRSAPCAVFCRADSAYLCAGCDAQIHAANRVASRHERVWVCEACERAPAAFLCKADAASLCSSCDADIHSANPLASRHQRVPILPISGYLYGPPTTLLGADDEGFVGGGREVEEEEDEGMEDEDEAASWLLLNPLKNSNNNKGNNGFLFSGEVDEYLDLVDCNSCGGGDNTFTTNTNTTTTTTTHHDEYSQQQQDHYGVPQKSYVGDSVVPVQQQQVQNFQLGLEFESSKAGFSYNGGSISQSVSVSSMDVGVVPESTMRDVSMNYSRPSKGTIDLFSGPPIQMSSHFSPMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFVKRTDVDAEVDQMFPTSLITDVGYGIVPSF 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g00392 390 SMART bboxneu5 21 68 IPR000315 GO:0008270
Trre14g00392 390 SMART bboxneu5 69 111 IPR000315 GO:0008270
Trre14g00392 390 CDD Bbox1_BBX-like 26 68 - -
Trre14g00392 390 Pfam CCT motif 321 363 IPR010402 GO:0005515
Trre14g00392 390 CDD Bbox1_BBX-like 68 111 - -
Trre14g00392 390 ProSiteProfiles Zinc finger B-box type profile. 64 111 IPR000315 GO:0008270
Trre14g00392 390 ProSiteProfiles Zinc finger B-box type profile. 26 68 IPR000315 GO:0008270
Trre14g00392 390 Pfam B-box zinc finger 66 111 IPR000315 GO:0008270
Trre14g00392 390 ProSiteProfiles CCT domain profile. 321 363 IPR010402 GO:0005515
Trre14g00392 390 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 26 377 IPR045281 GO:0009909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g00392 Trre-Chr14 3183032 3185584 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g00392 21 390 C2C2-CO-like Transcription Factor Family AT3G02380 55.906 1.64e-132 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Trre14g00392 zf-B_box 1.6e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g00392 K12135 - tpra:123889374 616.69