Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g00348 ATGGGTTCTATTTGTTCTTGTTTGAGTGTTGCTGATTTCGAAGATTATGCGAATCCACATAGTCATGTATATAGGAACTGTGTGTGCGGCGGTTGCTTCCTACAAAACCTTTTGGCTGTTTATGCATCAATATTCCGGAGAGGGGAAATGCAGCCGCTTCCTTCATCAATACAGGGGGCAGCATCTATGACTTCTACCGCAGCACTTGATAATTCTCTATCCGACATATACCGTTCTCCTCCAAGGCCGTTGCCTTATGATGCAGACCCTAGGCATTTCCGCTCACAGCATGACGGACTAGTTTCAAGGCGTGAGAAGGGTTCCAGTCATTTAAATGAGGAGTCAGAACCTTTAAGGGGTGATTTAGATGTAGATCCAGAATCTTTGAACTCAAGTGGTAAATGGAACGAATCCACTGGCAAAGATGGGTCAAAGGAATACCGTTCGAAGTCCATAGTAAGACTTTCGTCAGCTAAACTTACAACTGAACCAGCGTTTGTGTACTCGTCATCAGAAGAGGAGGATGTTTGTCCAACATGTCTTGAAGAATATACTGAAGAGAATCCGAAGATTATGACAAAATGTTCTCATCATTATCATCTTGGTTGCATATATGAGTGGATGGAGAGAAGTGACACCTGTCCTGTTTGTGGGAAGGTGATGCTATTCGATGAAACGACTTAA 684 0.4313 MGSICSCLSVADFEDYANPHSHVYRNCVCGGCFLQNLLAVYASIFRRGEMQPLPSSIQGAASMTSTAALDNSLSDIYRSPPRPLPYDADPRHFRSQHDGLVSRREKGSSHLNEESEPLRGDLDVDPESLNSSGKWNESTGKDGSKEYRSKSIVRLSSAKLTTEPAFVYSSSEEEDVCPTCLEEYTEENPKIMTKCSHHYHLGCIYEWMERSDTCPVCGKVMLFDETT 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g00348 227 CDD RING-H2_AIRP1-like 173 221 - -
Trre14g00348 227 ProSiteProfiles Zinc finger RING-type profile. 177 217 IPR001841 -
Trre14g00348 227 MobiDBLite consensus disorder prediction 99 146 - -
Trre14g00348 227 SUPERFAMILY RING/U-box 171 224 - -
Trre14g00348 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 222 IPR013083 -
Trre14g00348 227 FunFam E3 ubiquitin-protein ligase At3g02290-like 154 224 - -
Trre14g00348 227 MobiDBLite consensus disorder prediction 99 123 - -
Trre14g00348 227 Pfam RING-H2 zinc finger domain 172 217 IPR024766 GO:0008270
Trre14g00348 227 SMART ring_2 177 217 IPR001841 -
Trre14g00348 227 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 61 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g00348 Trre-Chr14 2754009 2757019 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g00348 1 226 C3H Transcription Factor Family AT5G15790 56.277 1.85e-90 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g00348 - - gmx:100788192 392.504