Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g00341 ATGGGAAGAGGAAGAGTTGAATTGAAGAGAATAGAGAACAAAATAAATCGACAAGTTACATTTGCTAAGAGAAGAAATGGACTTCTTAAGAAAGCTTATGAACTTTCTGTTCTTTGTGATGCTGAAGTTGCTCTTATCATCTTCTCTACTCGTGGCAAGCTTTATGAATTTTGTAGCACTTCTAACATGCTCAAAACTCTTGATAGGTATCAGAAATGCAGTTATGGTGCTGTTGAAGTTAGCAAACCTGCCAAAGAACTTGAGCAGAGCAGCTACCGTGAATACTTGAAGCTGAAACAAAGATTTGAAAATCTTCAAAGAACCCAAAGAAATCTTTTAGGGGAAGACCTTGGTCCACTGAGTTCTAAAGATCTTGAGCAGCTTGAAAGGCAATTGGATTCATCACTCAAGCAAGTCAGGTCTACAAAGACACAATTCATGCTGGATCAATTAGCTGATCTTCAAAATAAGGAACAGATGTTGGTAGAAGCAAACAGATCCTTGTCAATTAAGTTGGATGAAATCAATTCCAGAAATCAGTACAGACAATCATGGGAAGCCGGTGAACAAAGCATGCAATATGGTGGTCCACAAAATGCTCACTCTCAGAGCTTCTTCCAGCAGTTGGAGTGCAATCCCACATTGCAGATTGGTTCTGATTATAGGTACAACAATGTAGCTACAGATCAGATAGCTTCAACAAGTCAAGGTCAACAACAAGTGAATGGATTTGTTCCTGGATGGATGCTTTAA 753 0.3891 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFCSTSNMLKTLDRYQKCSYGAVEVSKPAKELEQSSYREYLKLKQRFENLQRTQRNLLGEDLGPLSSKDLEQLERQLDSSLKQVRSTKTQFMLDQLADLQNKEQMLVEANRSLSIKLDEINSRNQYRQSWEAGEQSMQYGGPQNAHSQSFFQQLECNPTLQIGSDYRYNNVATDQIASTSQGQQQVNGFVPGWML 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g00341 250 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Trre14g00341 250 Coils Coil 125 145 - -
Trre14g00341 250 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Trre14g00341 250 Pfam K-box region 88 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre14g00341 250 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trre14g00341 250 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre14g00341 250 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre14g00341 250 Coils Coil 95 115 - -
Trre14g00341 250 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Trre14g00341 250 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre14g00341 250 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 189 - -
Trre14g00341 250 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Trre14g00341 250 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre14g00341 250 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Trre14g00341 250 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Trre14g00341 250 FunFam MADS-box transcription factor 1 13 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g00341 Trre-Chr14 2702554 2707427 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g00341 1 250 MADS-box Gene Family AT5G15800 72.348 6.55e-120 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Trre14g00341 K-box 4.7e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g00341 K09264 - gmx:100786066 430.254