Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre14g00280 | ATGTCTCTCAAATGGACAGTTGAAATGAACATACCAAACATTATCCACAATCATGGCAAACCAATTCCACTTTCAAACTTAGTTTCAATTCTTAATGTTCCATCATCGAAATGCGGTAACGTGCAACGTATCATGCGTTACCTCGCACACAACGGATTCTTCGAGATAATAACAAATCAAGAATTGGAAAATGATGAAGAATCTTATGCTCTAACTGTTGCTTCAGAACTTCTTGTTAAAGGAAGTGAACTTTGTTTAGCTCCAATGGTTGAATGTGTTCTTGATCCAACTCTTTCTGGTTCATATCATGAGATGAAAAAATGGATTTATGAGGAAGATCTTACACTCTTTGGTGTTACTTTAGGAGCTGGTTTTTGGGATTTTCTTGAAAAGAATCCTGATTATAATAAATCATTTAATGAGGCTATGGCTAGTGATTTTAAAATGATAAATTTGGCATTGAGAGATTGTGATTTTGTGTTTGAAGGGTTGGAATCAATTGTTGATGTTGGTGGTGGAACTGGAACAACTGCTAAGATTATTTGTGAGAGATTTCCTAAGTTGAAATGTGTTGTGTTTGATAGGCCACAGGTTGTTGAGAATTTAGATGGAACCAACAACTTGACATATGTTGGTGGAGACATGTTCCAATCTATTCCTAATGGTGATGCTGTTCTTCTTAAGTGGATTTTACATAATTGGATTGATAAGGATTGCATAAGGATACTAAACAAATGTAAAGAAGCTGTTACAAGTGATGGGAAAAAAGGAAAAGTGATTATCATAGATATGGTGATAAATGAAAAGAAAGATGAGAACCAAATTACTCAAGTAAAGCTTCTTATGGATGTAAACATGGCTTCTCTTAATGGAAAAGAGAGAAATGAGAATGAATGGAAGAAACTCTTCAAAGAAGCAGGATTCCAAGACTATAAGATATCTCCTTTGACTGGATTTTTGTCTCTTATTGAGATCTATCCTTAA | 984 | 0.3435 | MSLKWTVEMNIPNIIHNHGKPIPLSNLVSILNVPSSKCGNVQRIMRYLAHNGFFEIITNQELENDEESYALTVASELLVKGSELCLAPMVECVLDPTLSGSYHEMKKWIYEEDLTLFGVTLGAGFWDFLEKNPDYNKSFNEAMASDFKMINLALRDCDFVFEGLESIVDVGGGTGTTAKIICERFPKLKCVVFDRPQVVENLDGTNNLTYVGGDMFQSIPNGDAVLLKWILHNWIDKDCIRILNKCKEAVTSDGKKGKVIIIDMVINEKKDENQITQVKLLMDVNMASLNGKERNENEWKKLFKEAGFQDYKISPLTGFLSLIEIYP | 327 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre14g00280 | 327 | PANTHER | O-METHYLTRANSFERASE | 1 | 312 | IPR016461 | GO:0008168 | |
| Trre14g00280 | 327 | PIRSF | O-mtase | 1 | 327 | IPR016461 | GO:0008168 | |
| Trre14g00280 | 327 | ProSiteProfiles | SAM-dependent O-methyltransferase class II-type profile. | 1 | 327 | IPR016461 | GO:0008168 | |
| Trre14g00280 | 327 | Pfam | Dimerisation domain | 1 | 49 | IPR012967 | GO:0046983 | |
| Trre14g00280 | 327 | SUPERFAMILY | "Winged helix" DNA-binding domain | 1 | 82 | IPR036390 | - | |
| Trre14g00280 | 327 | Gene3D | Vaccinia Virus protein VP39 | 79 | 327 | IPR029063 | - | |
| Trre14g00280 | 327 | Pfam | O-methyltransferase domain | 102 | 309 | IPR001077 | GO:0008171 | |
| Trre14g00280 | 327 | Gene3D | - | 1 | 78 | IPR036388 | - | |
| Trre14g00280 | 327 | FunFam | O-methyltransferase ZRP4 | 80 | 327 | - | - | |
| Trre14g00280 | 327 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 84 | 325 | IPR029063 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre14g00280 | Trre-Chr14 | 2226019 | 2227419 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre14g00280 | 1 | 325 | Monolignol Biosynthesis Gene Families | AT5G54160 | 31.532 | 6.74e-48 | 163 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre14g00280 | K22588 | K13262 | ag:AAC49926 | 580.482 |