Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g00270 ATGGCGTTCTTTGGTAAAATGGGGAAGTTACTCATGAACTCTGCTGTCAAGCAGATCAATCATGATTTATCGATGTCTACTCCTTCAGTTTTTCAAGCAATTAGATCCATGTCATCTGCAAAGCTTTTTGTTGGAGGTGTTTCATATAACACTGATGATATGAGTCTCCGAGAACATTTTGCTCGCTACGGTGAAGTTCTTGAGGCAAAGATTATCATGGATCGTGAGACTGGCAGGTCCCGAGGTTTTGGTTTCATAACTTTTGCAACGGCCGAGGAGGCATCTGCTGCCCTTCAGGCTATGGATAACCAGGATCTTCATGGTCGAACAATAAGAGTGAACTATGCTACAGAAAGGTCACGTCCTGGTTTTGGTGGCGGTGGTGGAGGCTATGGCGGTGGCGGAGGCTATGGTGGTGGCGGCAGTTATGGTGGTGGTGGCTATGGTGGCGGAGGCTATGGTGGCGGAGGCTATGGTGGCGGCGGCTATGGCGGTGGTAGCTATGGTCGTAATGATAATAACAGTGGTGGACGCTATGGAGGTGGTGGTGATACTTATGCTGCTGGTGGTGAACAAAGCAATGACTTCATTGAGCCACTTGAAAACAACCATGTGGCAGAGAACAATGATCAACCCGATGACTTCGCTGAGACCCGGAGGTGA 663 0.4887 MAFFGKMGKLLMNSAVKQINHDLSMSTPSVFQAIRSMSSAKLFVGGVSYNTDDMSLREHFARYGEVLEAKIIMDRETGRSRGFGFITFATAEEASAALQAMDNQDLHGRTIRVNYATERSRPGFGGGGGGYGGGGGYGGGGSYGGGGYGGGGYGGGGYGGGGYGGGSYGRNDNNSGGRYGGGGDTYAAGGEQSNDFIEPLENNHVAENNDQPDDFAETRR 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g00270 220 SUPERFAMILY RNA-binding domain, RBD 26 150 IPR035979 GO:0003676
Trre14g00270 220 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 23 193 - -
Trre14g00270 220 PRINTS Eggshell protein signature 36 52 - -
Trre14g00270 220 PRINTS Eggshell protein signature 123 138 - -
Trre14g00270 220 PRINTS Eggshell protein signature 173 191 - -
Trre14g00270 220 PRINTS Eggshell protein signature 148 158 - -
Trre14g00270 220 SMART rrm1_1 41 114 IPR000504 GO:0003723
Trre14g00270 220 MobiDBLite consensus disorder prediction 166 220 - -
Trre14g00270 220 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 112 IPR000504 GO:0003723
Trre14g00270 220 Gene3D - 12 138 IPR012677 -
Trre14g00270 220 CDD RRM2_NsCP33_like 41 116 - -
Trre14g00270 220 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 118 IPR000504 GO:0003723
Trre14g00270 220 FunFam Glycine-rich RNA-binding protein 3, mitochondrial 12 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g00270 Trre-Chr14 2130855 2133556 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g00270 33 126 C2H2 Transcription Factor Family AT2G19380 34.043 7.54e-12 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g00270 K12741 - gmx:100807155 191.43