Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g00258 ATGTTCACTTCTATTGCCTATTATAGAGCCGGTGTCATCCCGGTTAAATATCGTCGTGTTCCATGCTCCAAAAGTGGAGGGGTTAAGTTTGAACTCAATGGAAACCCTTATTTCTTGCTTGTTTTGCTGTATAATGTTGCCAATGCTGGAGATGTCTCTAGTGTGAGTATCAAAGGGTCTAATACTCAATGGATTCCCATGACACGCAATTGGGGACAAAAATGGCATATTGGAACAAATTTGGTAGGACAAGCCTTGTCATTTCAAGTTACTACAAGTGATGGAAAAACTATGCAGTTTGATTCAGTTTCTCCTTCAAATTGGCAATTTGGACAGACTTATGAGGGCAATGGAAATTTTTAG 363 0.3939 MFTSIAYYRAGVIPVKYRRVPCSKSGGVKFELNGNPYFLLVLLYNVANAGDVSSVSIKGSNTQWIPMTRNWGQKWHIGTNLVGQALSFQVTTSDGKTMQFDSVSPSNWQFGQTYEGNGNF 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g00258 120 PRINTS Expansin/Lol pI family signature 64 78 IPR007118 GO:0005576
Trre14g00258 120 PRINTS Expansin/Lol pI family signature 102 116 IPR007118 GO:0005576
Trre14g00258 120 PRINTS Expansin/Lol pI family signature 10 26 IPR007118 GO:0005576
Trre14g00258 120 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 37 116 IPR007117 -
Trre14g00258 120 SUPERFAMILY PHL pollen allergen 24 116 IPR036749 -
Trre14g00258 120 PANTHER EXPANSIN-A15 1 117 IPR002963 GO:0009664
Trre14g00258 120 Pfam Expansin C-terminal domain 28 105 IPR007117 -
Trre14g00258 120 PRINTS Expansin signature 26 38 IPR002963 GO:0009664
Trre14g00258 120 PRINTS Expansin signature 38 59 IPR002963 GO:0009664
Trre14g00258 120 PRINTS Expansin signature 2 15 IPR002963 GO:0009664
Trre14g00258 120 PRINTS Expansin signature 102 118 IPR002963 GO:0009664
Trre14g00258 120 PRINTS Expansin signature 73 94 IPR002963 GO:0009664
Trre14g00258 120 Gene3D - 25 120 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g00258 Trre-Chr14 2042533 2042895 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g00258 1 120 Expansin Gene Family AT5G39270 62.500 3.78e-51 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g00258 - - tpra:123886237 196.438