Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g00256 ATGTCTCACTTTTTCATTCCTTTGGCCTTTTTCACATTGCTCCTCGTACAGGCCATAGCTGGCATTGACCCAAATTGGTACGATGCTCATGCAACCTTCTATGGTGGTCCCTCAGGAGCTGGAACCATGCAGGGAGCCTGTGGTTATGGTGATCTCTACAAACAAGGATATGGACTTGCGACCACAGCACTAAGCACGGCTTTATTCAATCAAGGAGCTACTTGTGGTGCTTGTTTTCAGTTAGTTTGTGTCAACGATCCTCAATGGTGCATAAAGGGCGCAAGGCCAATTACAGTAACCGCAACAAATTTTTGTCCTCCAAATTCCGCGCAGCCTGGTGCTTGTAACCCACCACTAAAACACTTTGACTTAAGTTATAAAATGTTCACTTCTATTGCCTACGAAAAAGGCGGTATCATACCCGTTAAATATCGACGTGTTTCATGTGTCAAACAAGGGGGTGTCAGGTTTGAGATCAATGGAAACCCTAATTTTTTGTTTGTTTTGGTGTTCAATGTTGCCAATGCTGGTCATGTTTCTCGTGTTAGTGTCAAAGGGTCTAAGACTGGATGGATTCCCATGAAACGCAATTATGGACAAAAGTGGAATACTGGAGTGAATTTGGTTGGACAAGCTTTATCTTTTCAAGTTACTACAAGTGATGGAAAAACTTTGGAGTTTGATTCAGTTTCTCCTTACAACTGGCAATTTGGACAAACTTATGAGGGCAGGGGAAATTTTTAG 744 0.4247 MSHFFIPLAFFTLLLVQAIAGIDPNWYDAHATFYGGPSGAGTMQGACGYGDLYKQGYGLATTALSTALFNQGATCGACFQLVCVNDPQWCIKGARPITVTATNFCPPNSAQPGACNPPLKHFDLSYKMFTSIAYEKGGIIPVKYRRVSCVKQGGVRFEINGNPNFLFVLVFNVANAGHVSRVSVKGSKTGWIPMKRNYGQKWNTGVNLVGQALSFQVTTSDGKTLEFDSVSPYNWQFGQTYEGRGNF 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g00256 247 SMART dpbb_1 61 144 IPR007112 -
Trre14g00256 247 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 164 243 IPR007117 -
Trre14g00256 247 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Trre14g00256 247 PRINTS Expansin/Lol pI family signature 191 205 IPR007118 GO:0005576
Trre14g00256 247 PRINTS Expansin/Lol pI family signature 25 40 IPR007118 GO:0005576
Trre14g00256 247 PRINTS Expansin/Lol pI family signature 43 61 IPR007118 GO:0005576
Trre14g00256 247 PRINTS Expansin/Lol pI family signature 229 243 IPR007118 GO:0005576
Trre14g00256 247 PRINTS Expansin/Lol pI family signature 137 153 IPR007118 GO:0005576
Trre14g00256 247 Pfam Expansin C-terminal domain 155 232 IPR007117 -
Trre14g00256 247 Gene3D - 153 247 IPR036749 -
Trre14g00256 247 SUPERFAMILY Barwin-like endoglucanases 25 172 IPR036908 -
Trre14g00256 247 CDD DPBB_EXPA_N 26 149 - -
Trre14g00256 247 PANTHER EXPANSIN-A15 17 244 IPR002963 GO:0009664
Trre14g00256 247 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 154 IPR007112 -
Trre14g00256 247 SUPERFAMILY PHL pollen allergen 151 243 IPR036749 -
Trre14g00256 247 Gene3D - 16 149 IPR036908 -
Trre14g00256 247 Pfam Lytic transglycolase 61 144 IPR009009 -
Trre14g00256 247 PRINTS Expansin signature 83 94 IPR002963 GO:0009664
Trre14g00256 247 PRINTS Expansin signature 200 221 IPR002963 GO:0009664
Trre14g00256 247 PRINTS Expansin signature 56 70 IPR002963 GO:0009664
Trre14g00256 247 PRINTS Expansin signature 97 107 IPR002963 GO:0009664
Trre14g00256 247 PRINTS Expansin signature 112 129 IPR002963 GO:0009664
Trre14g00256 247 PRINTS Expansin signature 129 142 IPR002963 GO:0009664
Trre14g00256 247 PRINTS Expansin signature 165 186 IPR002963 GO:0009664
Trre14g00256 247 PRINTS Expansin signature 153 165 IPR002963 GO:0009664
Trre14g00256 247 PRINTS Expansin signature 229 245 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g00256 Trre-Chr14 2030525 2031574 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g00256 21 247 Expansin Gene Family AT5G39280 61.572 2.34e-105 304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g00256 - - tpra:123886237 461.84