Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre14g00232 | ATGGTACTAGGTGCCAATTTGGTTTTTCCTGCAGTTCTTAATGCTGCAATTGAACTCAACTTGTTTGAAATCATTGCTAAAGAAAGTTCACTAGATAATGGTGGATTCTTATCAGCTTTTGAAATTGCTTCAAAGTTACCAACTCAACACTCTGACTTACCGAATAGGCTTGATCGTATGTTGCGCTTGCTTGTTAGCTACTCTCTTCTGTCTGTTTCCACTCGGACCAATGACGATGATGGTAGTATCGTGAGAGTTTATGCGATCACCCCGTCGGGAAAATATTTTTCCTATGACGAAAATAATGACCATGGTTATCTTGGCTACTTCACATCGTTTATGTGTCACCCTGCTTTGATAGGGTTGTGGTTGAATTTCAAGGAAGCAGTGGTTGATCCAGAGGTTGACTTGTTCAAGAAAGTTAATGGAATGTCCAAGTATGAGTACATGGGGAAAGATCCACAAGTGAACCAAATATTCAACAAATCAATGACTAATGGCACCAAAATTCACATGAAAAAAATCCTTGAAATATACAAAGGATATGAGGGTGTATCAACTTTGGTTGATGTAGGTGGTGGAAATGGACAAACTCTCAAAATGATCATTGAAAATTATCCATCAATAAAGGGAATAAATTTTGATCTCCCTCAAGTGATTGAAAATGCATCACCCATTCCAGGGATTGAGCATATTGGAGGAAGTATGTTTGAAAGTATTCCACAAGGAGATGCCATAATGCTTAAGGCTGTATGCCATAATTGGTCAGATGAAAAATGCATAGAAATTTTTAGCAATTGTCACAAAGCTTTGCCTCAAAATGGAAAGGTCATACTTGTGGAGCTTGCATTGTCTGAATATCCAGAAGCAACAAATGCATCTCGAATGATTTCAATTATTGACAATATCATGTTCATCAATGCTGGTGGAAAAGAAAGAACTGCAAAAGAATATGAAAAATTGGCTCAACATTCTGGATTTTCAAGACTTGAAGTTGTTTGTTGTGCTTTCTCTATTATAGGAGTGATGGAACTTCACAAATAA | 1044 | 0.3707 | MVLGANLVFPAVLNAAIELNLFEIIAKESSLDNGGFLSAFEIASKLPTQHSDLPNRLDRMLRLLVSYSLLSVSTRTNDDDGSIVRVYAITPSGKYFSYDENNDHGYLGYFTSFMCHPALIGLWLNFKEAVVDPEVDLFKKVNGMSKYEYMGKDPQVNQIFNKSMTNGTKIHMKKILEIYKGYEGVSTLVDVGGGNGQTLKMIIENYPSIKGINFDLPQVIENASPIPGIEHIGGSMFESIPQGDAIMLKAVCHNWSDEKCIEIFSNCHKALPQNGKVILVELALSEYPEATNASRMISIIDNIMFINAGGKERTAKEYEKLAQHSGFSRLEVVCCAFSIIGVMELHK | 347 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre14g00232 | 347 | PIRSF | O-mtase | 1 | 347 | IPR016461 | GO:0008168 | |
| Trre14g00232 | 347 | FunFam | Caffeic acid O-methyltransferase | 101 | 347 | - | - | |
| Trre14g00232 | 347 | Pfam | Dimerisation domain | 12 | 65 | IPR012967 | GO:0046983 | |
| Trre14g00232 | 347 | Gene3D | - | 6 | 135 | IPR036388 | - | |
| Trre14g00232 | 347 | SUPERFAMILY | "Winged helix" DNA-binding domain | 6 | 99 | IPR036390 | - | |
| Trre14g00232 | 347 | FunFam | Caffeic acid 3-O-methyltransferase | 1 | 96 | - | - | |
| Trre14g00232 | 347 | Pfam | O-methyltransferase domain | 123 | 328 | IPR001077 | GO:0008171 | |
| Trre14g00232 | 347 | ProSiteProfiles | SAM-dependent O-methyltransferase class II-type profile. | 1 | 347 | IPR016461 | GO:0008168 | |
| Trre14g00232 | 347 | PANTHER | O-METHYLTRANSFERASE | 3 | 327 | IPR016461 | GO:0008168 | |
| Trre14g00232 | 347 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 103 | 343 | IPR029063 | - | |
| Trre14g00232 | 347 | Gene3D | Vaccinia Virus protein VP39 | 157 | 336 | IPR029063 | - | |
| Trre14g00232 | 347 | Gene3D | - | 139 | 175 | IPR036388 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre14g00232 | Trre-Chr14 | 1864151 | 1867048 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre14g00232 | 1 | 339 | Monolignol Biosynthesis Gene Families | AT5G54160 | 48.256 | 2.56e-111 | 327 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre14g00232 | - | - | gmx:100798295 | 489.189 |