Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g00222 ATGGGTTGCGTCAACTCCAAGAAAGCTCTTACCGGAGAAGCTGATACAGTTTCTCCGGTTGGACCTTACATTTATTCGAGTTCTTCTCGAAAAAGGAGCAATGGTTCAGGTAGAAGCATGGTTGTGGAGACTTCTCCATCTTCTAGAGGACCTTCTGGTGTTGTTGTCAATGTCACACATCAACAACATCATCAACAACAACAACAACAACAGATTGGTGACCTGATGAAACCCGTGGAGTGGAAAAAGGGAGATTTGAATGTGAAGATTGGTTTTTATCATAGGTTTGTTGAAGGTGAACAGATTGCTGCTGGTTGGCCTTCTTGGCTCACTTCTGTTGCTGGTGAAGCTATTCATGGTTTGGTCCCTCTCAAAACTGATTCTTTTGAGAAATTAGATAAGGTTGGACAAGGGACATATAGCAGTGTTTTCCAAGCACGCGAAGTCGAGACAGGGAGGATGGTTGCCTTGAAGAAGGTGCGGATGGACACACTTCAACCTGAGAGCATTAGGTTCATGGCTCGGGAGATAATAATCCTTCGCACACTGGACCACCCTAACATCATGAAGTTAGAGGGCATAATCACTTCACAACTATCAAATAGTATATACCTTGTATTTGAATACATGGAGCATGATCTTGCTGGCCTAGTATCTAACCCCGATATCAAGTTCACAGACGCACAGATTAAGTGTTACATGAGACAGCTATTGAGTGGAATTGAGCATTGTCACCTACGAGGTATCATGCATCGAGACATTAAAGTATCAAATATATTAGTTAACAACGAAGGCATTCTCAAGATAGGAGACTTTGGATTAGCAAATAACGTCAGCCCTAATAGCAAGCGTCCTTTAACCAGCCGTGTGGTGACTCTATGGTATCGTCCTCCCGAGCTTTTGATGGGATCAACAAACTACGGAGTTACAGTGGATCTGTGGAGTATAGGATGTGTGTTTGCTGAACTTTTTATAGGGAAGCCTATCCTTAAGGGGAGAACCGAGGTGGAACAGTTGCACAAAATTTTTAAGCTTTGTGGATCTCCACCTGAACAATTTTGGAAAAAGAGTAAGCTTCCGCTTGCAACAATGTTTAAGCCTCAGACTAGTTACGAAAGCTCCCTTGCGGAGAGGTGTAAAGGTTATCTTCCTGCAACTGCTGTGAACCTACTTGAGACCTTACTCGCTGTTGATCCTTCCAAACGTGGTACTGCCTCATCTGCACTTATGTCCGAGTATTTCAACACCGCACCATATGCTTGTAGTCCATCACTCCTTCCAAAGTATCTACCAAGTAAAGAAATGGATGCTAAAAACCGGGATGACATGAACAGGAAAAAGAATGGCGGTAAAGTACGAGAGCGAGAGGCTGTAACATCAGGAAGGCAAAGACGGGCCCATAAAGTTATTCAGGATCCTAACAATGTCAACAAACCGGCTATGAAAGAGAATATTTCTCAAAACCCTCGTAGAGACGATGATGGTAAAGAACATCATACAAAGGGAAGAGTAGGAGCTATGCACAAAGAGCAACAAAGACATTTGTATGATGCAAAATCAGATAATGTACAAAGGATGAATGGTTACAACGGCTATAGTGTGTACTCAGGACCAGCACCAGTATCAGGATCTAGTGGCTTTACATGGGCGAAAAGAAGAAAGCCGGATGCTTCATCGGTATTATCAGATGGCTCAAGAAGCAAAATCAGTGCACTGGATCCAACCTTTGCAAAAGGCACATATGATTTAACGAAACACGGGATAGAAGTTTCAGAAAGAAAACATCATTACAATACAAGGCATCACGATGAGATTTCCAAGCATGTAGCACAAAAGCACCAGGGTCGTAATGTAGAATCGTTTGATGCAGCTGATATATACAATTCCAATTACTTCATGGATCTTGATCTCATAGAAAAATCAGATACTCAAATAAATGCACAGGACGACAAAAATTATGCCGAACCTGTGGAACAATCAGTACCAACTACGATCCAAACAAATAAAAATGATGAGCTATTAAATTGGCATGAAAATAAAATGTGGCGGCAATCAGTTCGTAAATCAAGGTTGGGAAGAGACAGACAAATGATACAAGAATAA 2103 0.4184 MGCVNSKKALTGEADTVSPVGPYIYSSSSRKRSNGSGRSMVVETSPSSRGPSGVVVNVTHQQHHQQQQQQQIGDLMKPVEWKKGDLNVKIGFYHRFVEGEQIAAGWPSWLTSVAGEAIHGLVPLKTDSFEKLDKVGQGTYSSVFQAREVETGRMVALKKVRMDTLQPESIRFMAREIIILRTLDHPNIMKLEGIITSQLSNSIYLVFEYMEHDLAGLVSNPDIKFTDAQIKCYMRQLLSGIEHCHLRGIMHRDIKVSNILVNNEGILKIGDFGLANNVSPNSKRPLTSRVVTLWYRPPELLMGSTNYGVTVDLWSIGCVFAELFIGKPILKGRTEVEQLHKIFKLCGSPPEQFWKKSKLPLATMFKPQTSYESSLAERCKGYLPATAVNLLETLLAVDPSKRGTASSALMSEYFNTAPYACSPSLLPKYLPSKEMDAKNRDDMNRKKNGGKVREREAVTSGRQRRAHKVIQDPNNVNKPAMKENISQNPRRDDDGKEHHTKGRVGAMHKEQQRHLYDAKSDNVQRMNGYNGYSVYSGPAPVSGSSGFTWAKRRKPDASSVLSDGSRSKISALDPTFAKGTYDLTKHGIEVSERKHHYNTRHHDEISKHVAQKHQGRNVESFDAADIYNSNYFMDLDLIEKSDTQINAQDDKNYAEPVEQSVPTTIQTNKNDELLNWHENKMWRQSVRKSRLGRDRQMIQE 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g00222 700 ProSitePatterns Serine/Threonine protein kinases active-site signature. 249 261 IPR008271 GO:0004672|GO:0006468
Trre14g00222 700 PANTHER CELL DIVISION PROTEIN KINASE 127 418 - -
Trre14g00222 700 FunFam probable serine/threonine-protein kinase At1g54610 116 211 - -
Trre14g00222 700 ProSitePatterns Protein kinases ATP-binding region signature. 135 158 IPR017441 GO:0005524
Trre14g00222 700 SMART serkin_6 129 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre14g00222 700 MobiDBLite consensus disorder prediction 485 512 - -
Trre14g00222 700 SUPERFAMILY Protein kinase-like (PK-like) 123 419 IPR011009 -
Trre14g00222 700 Pfam Protein kinase domain 129 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre14g00222 700 Gene3D Transferase(Phosphotransferase) domain 1 212 453 - -
Trre14g00222 700 MobiDBLite consensus disorder prediction 433 471 - -
Trre14g00222 700 ProSiteProfiles Protein kinase domain profile. 129 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre14g00222 700 MobiDBLite consensus disorder prediction 432 512 - -
Trre14g00222 700 CDD STKc_CDK9_like 129 414 - -
Trre14g00222 700 Gene3D Phosphorylase Kinase; domain 1 120 211 - -
Trre14g00222 700 MobiDBLite consensus disorder prediction 21 54 - -
Trre14g00222 700 FunFam probable serine/threonine-protein kinase At1g54610 212 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g00222 Trre-Chr14 1817203 1821968 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g00222 126 455 Core Cell Cycle Gene Families AT5G10270 46.532 1.16e-103 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Trre14g00222 Pkinase 1e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g00222 - - lja:Lj1g3v2982400.1 979.548