Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g00220 ATGGATGGACCAGCTGAGCACGGTGGTGGTTCAAGTATAGACTCGTTACTGCAACATTATAAACTGGGAAAAACACTTGGTATTGGTTCCTTTGGCAAGGTGAAAATTGCTGAACATGTACTGACTCGTCATAAGGTTGCCATCAAAATCCTCAACCGTCGCAAGATAAAGAACATGAAAATGGAAGAAAAAGTCAGAAGAGAAATAAAAATATTAAGACTGTTCATGCATCCTCACATCATACGGCTGTATGAGGTGATAGAGACCGAAACTGACATATATGTTGTCATGGAGTATGTGAAATGTGGGGAGCTATTTGATTATATTGTAGAAAAGGGCAGGTTACAAGAAGAGGAAGCTCGCAATTTCTTTCAGCAGATAATATCTGGTGTCGAGTACTGTCACAGAAATATGGTTGTTCATAGGGATCTGAAGCCTGAGAATTTGCTCTTGGACTCTAAATGCAATGTCAAAATAGCTGATTTCGGTTTAAGCAACATAATGCGTGACGGACACTTTCTTAAGACAAGTTGTGGCAGCCCCAACTATGCAGCTCCTGAGGTTATCTCTGGGAGATTGTATGCTGGACCTGAAGTAGATGTCTGGAGCTGTGGTGTTATTTTATATGCTCTTCTTTGTGGAACTCTTCCTTTTGATGATGAAAACATTCCAAATCTCTTCAAGAAAATTAAGGGAGGAATATACACTCTTCCTAGTCATCTGTCACCGGGTGCTAGAGATTTGATACCAAGGATGCTGGTAGTTGACCCTATGAAGAGGATGACCATACCTGAGATCCGTCAACATTCATGGTTCCAACTCGGACTTCCACGTTATTTAGCTGTGCCACCGCCCGATACAATGCAACAGGCTAAGAAGATTGATGAGGAAATCCTTCAGGAAGTGGTAAATATGGGATTTGACAGGAATCAATTGATTGAATCTCTTCGCCACCGGATACAGAATGAGGGTACCGTTGCATACTATTTAATATTAGACAACCGGTTCCGTGTTTCCAGCGGCTATCTTGGAGCTGAGTATCAAGAGTCCATGGACTCTAGCTTTAGCCAAATGCATCCCAATGAAGTTGCTGGACATCGCATTCCGGGCTATATGGATTATCCAAGAGCTGGATTGAGACCACAGCTCCCTGTTGAAAGAAAATGGGCTCTTGGGCTTCAGTCTAAAGCTCATCCTCGTGAAATAATGACTGAGGTCCTTATAGCTCTCCAAGAATTAAATGTTTGTTGGAAGAAGATTGGGCACTACAACATGAAGTGCAGGTGGGATGCTGGCATTCTCGGTCATCATGAAGGAACGATGAACAATGCTGCGCATAATAATCATTACTTTAGTGATGATTCCAGCATTATTGAGAATGTGGCTGTTTCTTGTTCAAATGCAGTCAAATTTGAACTCCAGCTTTACAAAACTCGGGAAGAGAAGTATCTTCTTGATCTTCAAAGGGTGCATGGTTCAGAGTTTCTTTTCTTGGATCTTTGTGCCGCTTTCCTTTCCCAGCTTCGTGTCCTCTAG 1536 0.4219 MDGPAEHGGGSSIDSLLQHYKLGKTLGIGSFGKVKIAEHVLTRHKVAIKILNRRKIKNMKMEEKVRREIKILRLFMHPHIIRLYEVIETETDIYVVMEYVKCGELFDYIVEKGRLQEEEARNFFQQIISGVEYCHRNMVVHRDLKPENLLLDSKCNVKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGRLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLVVDPMKRMTIPEIRQHSWFQLGLPRYLAVPPPDTMQQAKKIDEEILQEVVNMGFDRNQLIESLRHRIQNEGTVAYYLILDNRFRVSSGYLGAEYQESMDSSFSQMHPNEVAGHRIPGYMDYPRAGLRPQLPVERKWALGLQSKAHPREIMTEVLIALQELNVCWKKIGHYNMKCRWDAGILGHHEGTMNNAAHNNHYFSDDSSIIENVAVSCSNAVKFELQLYKTREEKYLLDLQRVHGSEFLFLDLCAAFLSQLRVL 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g00220 511 CDD AMPKA_C 386 508 - -
Trre14g00220 511 FunFam Non-specific serine/threonine protein kinase 11 350 - -
Trre14g00220 511 SMART serkin_6 20 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre14g00220 511 SUPERFAMILY Protein kinase-like (PK-like) 17 273 IPR011009 -
Trre14g00220 511 SUPERFAMILY UBA-like 282 331 IPR009060 GO:0005515
Trre14g00220 511 Gene3D Transferase(Phosphotransferase) domain 1 10 353 - -
Trre14g00220 511 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 462 510 IPR001772 -
Trre14g00220 511 FunFam Non-specific serine/threonine protein kinase 392 509 - -
Trre14g00220 511 Gene3D Kinase associated domain 1, KA1 392 509 - -
Trre14g00220 511 CDD UBA_SnRK1_plant 294 334 - -
Trre14g00220 511 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
Trre14g00220 511 Pfam UBA/TS-N domain 294 330 IPR015940 -
Trre14g00220 511 SUPERFAMILY KA1-like 329 510 IPR028375 -
Trre14g00220 511 Pfam Protein kinase domain 20 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre14g00220 511 Pfam Kinase associated domain 1 468 510 IPR001772 -
Trre14g00220 511 CDD STKc_AMPK_alpha 19 272 - -
Trre14g00220 511 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 293 333 IPR015940 -
Trre14g00220 511 SMART uba_6 295 332 IPR015940 -
Trre14g00220 511 ProSitePatterns Serine/Threonine protein kinases active-site signature. 139 151 IPR008271 GO:0004672|GO:0006468
Trre14g00220 511 PANTHER SERINE/THREONINE KINASE 18 337 - -
Trre14g00220 511 FunFam Non-specific serine/threonine protein kinase 8 101 - -
Trre14g00220 511 ProSiteProfiles Protein kinase domain profile. 20 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g00220 Trre-Chr14 1802217 1806227 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g00220 20 272 CBL-interacting serine-threonine protein kinases AT4G24400 52.362 6.68e-93 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_AMPK Trre14g00220 Pkinase 2.1e-80 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g00220 K07198 - gmx:100796687 912.909