Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g00216 ATGACAAGGAAGAGAAATGTTTCTGAAACACTAGTTGAAGACATTAGTCCTCATGAAACAATCAATGAATGGAATGAGGTAATGAAGGAATCTAGTACACAAGGAACTAGAAATATTAGAAAGAGATTTGTTGGTGTGAGACAAAGACCGTCAGGAAGATGGGTAGCTGAGATAAAAGATACCATTCAAAAGATAAGAGTTTGGTTAGGAACATATGATACAGCTGAAAAAGCTGCAAGAGCCTATGATGAAGCTGCATGTATACTTCGTGGTTCCAACACTAGAACAAATTTCTTACCTTCTTCTAAATCTTCCACTAGTACTCATGTTCTTCCTTCAAAAATCACCAATCTCCTCCTTCAAAGACTTAAAGCAAGGACTTATCCTTGCGATAGCGGTCACAACTGTGAATCTTTATATTGCGGTAAAATACAGGAAAATGCCGCCGATACACTTGTGGTGCCATTGTTGAGGCCTAAAAATTCTTTATATTGCGGCCGCTATGAACCCTTCATTTGGGATAAAATGTGGGAAAATGAGGCCGATGCTGTTGAAAGTAGTGAAGTTGCAATGCCGTTGCAGAGACCTCAAAATCCTTTATATTACGGTAAAATGCAGGAAAATGAGGCCGATGCGGTTGCGATTGCAATGCCGCATAGACCACAAAATCCTTTATATTGTGGCTACAATTGCAATTTCGGACCGCAATTTAAAACCATGTCTTCTTCTTCCAACTCTTATTATATGAACAACAAACAAGATGTATATGGAAATGAATCAACTTACATAACAAATGAACAATTTATAGATTTCTTTGATGGCCTTGAAGAAGATTATAACACAAATAGCAACATTGAGTTTTATAATAGTAGTAGTGTACAAATTGATGACATTACAAGTGGTTTTGAATCATGTTTAACTGAAAAAGATGAATCTATGATGACACAAACTACAACAAGTGATGAAAGAGAGGAAGACATTGAAGAAAACATTGATTTGAGTTTCCAACAACATTTTCATTTCCTTGACAATGTTAATGATGTTGCAATGAACTATTATTCTCCTTTTGATATTGAGGAGCATGTGGAGTTAGAGATCAATGATGATGATGATGAATCTTCAATGCTAAGAAATGCTATGAAGAGAATGAAATATGAGAGGAAAATTTCAGCTTCTTTATATGCATTCAATGGAATACCTGAATGCTTGAAGTTGAAACTTGGATCAGAAAACAAAACAATAGAGTTTTCTAATGAACTAACCAACCTTAAAAAGGCTTGTAACAAAAACAAATTTGATGCTTAG 1305 0.3517 MTRKRNVSETLVEDISPHETINEWNEVMKESSTQGTRNIRKRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTYDTAEKAARAYDEAACILRGSNTRTNFLPSSKSSTSTHVLPSKITNLLLQRLKARTYPCDSGHNCESLYCGKIQENAADTLVVPLLRPKNSLYCGRYEPFIWDKMWENEADAVESSEVAMPLQRPQNPLYYGKMQENEADAVAIAMPHRPQNPLYCGYNCNFGPQFKTMSSSSNSYYMNNKQDVYGNESTYITNEQFIDFFDGLEEDYNTNSNIEFYNSSSVQIDDITSGFESCLTEKDESMMTQTTTSDEREEDIEENIDLSFQQHFHFLDNVNDVAMNYYSPFDIEEHVELEINDDDDESSMLRNAMKRMKYERKISASLYAFNGIPECLKLKLGSENKTIEFSNELTNLKKACNKNKFDA 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g00216 434 SUPERFAMILY DNA-binding domain 42 99 IPR016177 GO:0003677
Trre14g00216 434 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700|GO:0006355
Trre14g00216 434 CDD AP2 41 98 IPR001471 GO:0003700|GO:0006355
Trre14g00216 434 Pfam AP2 domain 42 91 IPR001471 GO:0003700|GO:0006355
Trre14g00216 434 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Trre14g00216 434 PRINTS Ethylene responsive element binding protein signature 65 81 IPR001471 GO:0003700|GO:0006355
Trre14g00216 434 SMART rav1_2 42 105 IPR001471 GO:0003700|GO:0006355
Trre14g00216 434 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 36 390 - -
Trre14g00216 434 Gene3D AP2/ERF domain 41 99 IPR036955 GO:0003700|GO:0006355
Trre14g00216 434 FunFam ethylene-responsive transcription factor RAP2-11 41 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g00216 Trre-Chr14 1753934 1755238 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g00216 29 98 AP2-EREBP Transcription Factor Family AT5G19790 71.429 1.56e-30 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre14g00216 AP2 2.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g00216 K09286 - jre:108985950 223.402