Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g00206 ATGCAACATTCATCAAGTCATGTGGTAGAATCATCAAGTTTGAGAAAAGGGGCATGGACTAAATTAGAGGATGATCTTCTCAAAGATTGTATTCAACGTTATGGGGTGGGAAAATGGCACTTAGTTCCTCAAAGAGCAGGATTGAAGAGATGCCGCAAGAGTTGTAGATTGAGATGGTTGAACTATCTAAACCCAAATATCAAGAGGGGAGAATTTAGTCAAGATGAAGTTGATTTGATGATCAAATTGCACAAACTTTTAGGAAACAGATGGTCATTAATTGCTGGAAGACTTCCGGGAAGAACTTCAAATGATGTGAAAAATTATTGGAACACCAACATGCGTAGCAAAAAAAAAGGAAAAAATAGAAACAATGAAACCACATGA 387 0.3669 MQHSSSHVVESSSLRKGAWTKLEDDLLKDCIQRYGVGKWHLVPQRAGLKRCRKSCRLRWLNYLNPNIKRGEFSQDEVDLMIKLHKLLGNRWSLIAGRLPGRTSNDVKNYWNTNMRSKKKGKNRNNETT 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g00206 128 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Trre14g00206 128 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Trre14g00206 128 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 7 120 - -
Trre14g00206 128 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Trre14g00206 128 Gene3D - 16 68 - -
Trre14g00206 128 MobiDBLite consensus disorder prediction 106 128 - -
Trre14g00206 128 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Trre14g00206 128 SMART sant 15 65 IPR001005 -
Trre14g00206 128 SMART sant 68 116 IPR001005 -
Trre14g00206 128 FunFam Myb transcription factor 16 68 - -
Trre14g00206 128 CDD SANT 71 114 IPR001005 -
Trre14g00206 128 CDD SANT 18 63 IPR001005 -
Trre14g00206 128 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Trre14g00206 128 Pfam Myb-like DNA-binding domain 69 112 IPR001005 -
Trre14g00206 128 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Trre14g00206 128 Gene3D - 70 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g00206 Trre-Chr14 1695577 1696532 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g00206 14 117 MYB Transcription Factor Family AT1G66370 74.038 1.75e-53 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre14g00206 Myb_DNA-binding 2.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g00206 - K09422 pvu:PHAVU_008G038600g 202.601