Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g00203 ATGGATGATGAAAAGTTCAAACTTCCGGTTGGTTTTCGATTCCATCCGACCGATGAAGAGCTCATAAGTCAATACCTTGTCAAGAAGGTTATTGACGATAGCTTCTGTGCTATAGCTATCGCAGAGATTGATATGAATAAGTGTGAACCATGGGATTTGGCTGAGTTAGCTAAAATGGGAGAAACAGAATGGTATTTTTTCTGTGTGAGGGACAAAAAATACCCAACTGGACAAAGGACAAACAGGGCTACTAATGCTGGTTACTGGAAGGCCACTGGCAAAGACAAAGAGATTATCAAGGGAAATGACTTAATTGGGATGAAGAAAACACTGGTTTTCTACAAAGGAAGAGCTCCAAGAGGTGAAAAAACCAATTGGGTCATGCATGAATACAGACTGGAGGGTAAAAACACAATTTCTGACCAGAATCTCTCCAAACAAGGATCGGGTGAATGGGTTATATCTAGAGTCTATGAGAAGGGAAATTTTGGAAGGAAAATGCATGGTAATTCAAAACTTGTAAGGTTTAACTCTTCTAGAGAAGGACCATCAAATGCTAATGAATCTCTATTGCCTCCATTGATGGATTCTCCTCCATACAATAATGAAACCAAAACTAATTTTGGTGATTTCTCTCACCATGTCCTCAATTCCTTCTCCATGAAAAATGATGAAACTATGAACATTTCATCCTCTTCCAAACAATTTGGTGCTGAATTAGCAACACAAAACTGTTTCTTGTCTCAACAAGAATCCATGTTGAAGATGCAAATGGAGAATAATGAGAATATTGCAACAAGTTCAAAGCAATTTGTAAAACAAGACTTTTCTTTTGATGGTGATATTTCATCTGTGGTTTATGGAAATAACATGTTTCAAAGGTGGTATGGGAATCAAGAATTTGCTCCAGCTTCTTCTACTGATCAGCCTGTGGTCACTGATTGCTTGTGGAATTACTGA 960 0.3792 MDDEKFKLPVGFRFHPTDEELISQYLVKKVIDDSFCAIAIAEIDMNKCEPWDLAELAKMGETEWYFFCVRDKKYPTGQRTNRATNAGYWKATGKDKEIIKGNDLIGMKKTLVFYKGRAPRGEKTNWVMHEYRLEGKNTISDQNLSKQGSGEWVISRVYEKGNFGRKMHGNSKLVRFNSSREGPSNANESLLPPLMDSPPYNNETKTNFGDFSHHVLNSFSMKNDETMNISSSSKQFGAELATQNCFLSQQESMLKMQMENNENIATSSKQFVKQDFSFDGDISSVVYGNNMFQRWYGNQEFAPASSTDQPVVTDCLWNY 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g00203 319 MobiDBLite consensus disorder prediction 176 196 - -
Trre14g00203 319 SUPERFAMILY NAC domain 6 160 IPR036093 GO:0003677|GO:0006355
Trre14g00203 319 Gene3D NAC domain 17 164 IPR036093 GO:0003677|GO:0006355
Trre14g00203 319 ProSiteProfiles NAC domain profile. 8 160 IPR003441 GO:0003677|GO:0006355
Trre14g00203 319 Pfam No apical meristem (NAM) protein 9 133 IPR003441 GO:0003677|GO:0006355
Trre14g00203 319 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 256 - -
Trre14g00203 319 FunFam NAC domain-containing protein 100-like 17 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g00203 Trre-Chr14 1649431 1651428 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g00203 8 319 NAC Transcription Factor Family AT5G07680 48.225 8.37e-94 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre14g00203 NAM 4.2e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g00203 - - cam:101488836 415.616