Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g00189 ATGTTAGAGACAAAAGACTCTGCCATCAAACTGTTCGGTAAAACAATTCCGGTGCCGGAGATTCTTCTCGAAACTCCGGCGGTTTTATCTTCTGGTGATATCATTGATGAGAGTACTCATGATGAAAATCATGATTCCTCTACAAACTCTTCGAGGGAGTCACATAATACTAGAGATACACATGAGCAAGAGATTGAGAAGGATACATTGGGAGAAAATCAAATTGATGAAAAGAACGAAGGAGTCCCTACGCAATCGACAGAAGAATCTGTTACTATGTCCACCGAAAGGGAGGCTGCTACGTTGAAAACTTCAAAGGTCGAAGAAGAAGAACAAGATGAGACAAGTAATTCACAAGATAAGAACCTTAAAAAACCCGACAAAATAATTCCTTGTCCTAGATGTAGCAGCATGGACACAAAGTTCTGCTACTATAATAATTACAATGTCAACCAACCCCGTCACTTCTGCAAGAAATGCCAGAGATACTGGACTGCAGGTGGAACCATGAGAAATGTACCTGTAGGTGCCGGTAGAAGAAAGAACAAGAACACTTCTTCTCATTACCATCAGATAACTGTCTCTGAAGCAACACTCCAAAATTCTCAGATATACTCGCCCTTGAAATGCAACGATACGATCCTTACATTTGGATCTGATACACCCTTGTGTGGATCAATGACATCTGTTTTGAAACTTGCTGATAAATCAATGCAAAATTACGCAAGAAATGGATTTTGTAAACCAGAAGTACTAAGAATTCATGTTCCTCATGCAAGTGGAGAAAAAGGTAATGATCAATCAAATATATCATCGATTACATCGACAAAGTCTATAGAAGTTGGTAGTACCAATGTATCACAAGAACAAGCTATGCGGAACGGCCAGAGGTTATCACCACAAGGGGCCTACTTTCCTTCAGGAACTCCTTGGTCTTTCCCATGGAATCAAGTGCAATGGAGCTCATCGATTCCACCACCAACTTTTTGTCCACCGGGATTCTCCATGCCATTCTATCCCGCGACATCTTATTGGGGTTGTACCATGCCAGGGGCATGGAACTTTCCATGGCAAGCACAACCGTCTTCGCCAAATGGTCCAAACCCTAACTCTAGTCCAAACTCTCCAACATTAGGAAAACATTCAAGGGATGACAACATGCTTAAATCGAGCGAAGATGGTAGGAAAGAAAGTAGAGAAGAAAAATGTTTGTGGTTTCCAAAAACTTTAAGGATCGATGACTCGGGAGAAGTAGAAAAAAGCTCTTTATGGACAACACTTGGGATTAAAAATAAAAACGCCGACTCAGTTTCTTCAGGAAGACTCTTTAATGCATTCCCTTCAAAGTGTGACGAGAGAAATCACTCAGTAAAAGCGACTTCAGTCTTGCAGGCCAATCCAGCAGCGTTGTCTAGGTCACTTAACTTTCGCGAAACTTCATAA 1443 0.4123 MLETKDSAIKLFGKTIPVPEILLETPAVLSSGDIIDESTHDENHDSSTNSSRESHNTRDTHEQEIEKDTLGENQIDEKNEGVPTQSTEESVTMSTEREAATLKTSKVEEEEQDETSNSQDKNLKKPDKIIPCPRCSSMDTKFCYYNNYNVNQPRHFCKKCQRYWTAGGTMRNVPVGAGRRKNKNTSSHYHQITVSEATLQNSQIYSPLKCNDTILTFGSDTPLCGSMTSVLKLADKSMQNYARNGFCKPEVLRIHVPHASGEKGNDQSNISSITSTKSIEVGSTNVSQEQAMRNGQRLSPQGAYFPSGTPWSFPWNQVQWSSSIPPPTFCPPGFSMPFYPATSYWGCTMPGAWNFPWQAQPSSPNGPNPNSSPNSPTLGKHSRDDNMLKSSEDGRKESREEKCLWFPKTLRIDDSGEVEKSSLWTTLGIKNKNADSVSSGRLFNAFPSKCDERNHSVKATSVLQANPAALSRSLNFRETS 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g00189 480 MobiDBLite consensus disorder prediction 36 75 - -
Trre14g00189 480 MobiDBLite consensus disorder prediction 358 396 - -
Trre14g00189 480 ProSiteProfiles Zinc finger Dof-type profile. 130 184 IPR003851 GO:0003677|GO:0006355
Trre14g00189 480 MobiDBLite consensus disorder prediction 78 100 - -
Trre14g00189 480 MobiDBLite consensus disorder prediction 36 128 - -
Trre14g00189 480 PANTHER CYCLIC DOF FACTOR 2 5 480 IPR045174 GO:0003700|GO:0006355
Trre14g00189 480 MobiDBLite consensus disorder prediction 382 396 - -
Trre14g00189 480 ProSitePatterns Zinc finger Dof-type signature. 132 168 IPR003851 GO:0003677|GO:0006355
Trre14g00189 480 MobiDBLite consensus disorder prediction 281 301 - -
Trre14g00189 480 Pfam Dof domain, zinc finger 128 184 IPR003851 GO:0003677|GO:0006355
Trre14g00189 480 MobiDBLite consensus disorder prediction 101 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g00189 Trre-Chr14 1585858 1588466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g00189 6 480 C2C2-Dof Transcription Factor Family AT5G39660 42.043 8.25e-104 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Trre14g00189 zf-Dof 1.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g00189 - - mtr:11410541 699.893