Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g00178 ATGGAGGGAATAGACAGATCAAGATCAACATGCCGTTTGGTAACTGTTACAAATGAGTTGCAAAATCGTATAACCCAAAAGCAATCAATGTACCCTCCTGGCTTTCCAAGAAAGGTATTTGCAGAGGTTATAGGGACATATTTGTTGGTGTTTGTCGGAAGTGGGACTGCAGCTATGAATGCAATTGATGAAAACAAAGTGTCAAAATTGGGAGCTTCACTTGCAAGTGGATTCATTGTTACAGTTATGATTTATGCAATTGGACACATCTCTGGTGCACATATGAATCCGGCTGTTTCCTTAGCTTTTGCCACCGTTAGCCATTTTCCTTGGAAACAGGTTTGTCTCTTATACACTATACTGTACTTCCTCTACCATTCCAAAACTTTTGGTGGCTTTTTTTGA 405 0.3975 MEGIDRSRSTCRLVTVTNELQNRITQKQSMYPPGFPRKVFAEVIGTYLLVFVGSGTAAMNAIDENKVSKLGASLASGFIVTVMIYAIGHISGAHMNPAVSLAFATVSHFPWKQVCLLYTILYFLYHSKTFGGFF 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g00178 134 Gene3D Glycerol uptake facilitator protein. 5 128 IPR023271 -
Trre14g00178 134 SUPERFAMILY Aquaporin-like 35 118 IPR023271 -
Trre14g00178 134 PANTHER AQUAPORIN NIP2-1 21 116 IPR034294 -
Trre14g00178 134 Pfam Major intrinsic protein 35 116 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre14g00178 134 ProSitePatterns MIP family signature. 94 102 IPR022357 -
Trre14g00178 134 PRINTS Major intrinsic protein family signature 76 100 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre14g00178 134 PRINTS Major intrinsic protein family signature 37 56 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g00178 Trre-Chr14 1502393 1503305 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g00178 10 114 Major Intrinsic Protein MIP AT1G80760 38.739 1.16e-21 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g00178 K09874 - gmx:100788071 140.198