Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g00174 ATGAATATGGGAGATAACAACACTAGAGAAGACCATGTTGAAATTTGCATAGAATCTTTAGAAGCTGCAAATTTTAACAACCCTAATGACATTGACAAAGTATGTGAAGAACAAGTTGAAAAAAGTGAACCAAAGGGTGAATGTCGCTATTGCCATGAAGAAGAATTGGTTTCTAGGCTTGAAGCACCATGTGGTTGTGATGGAAGCTTAAAGTATGCTCACAGGCAATGTGTTTCTCATTGGTGCAATGTCAAACGCAACATAATATGTGAGATCTGCAAGCAGGTTTTCTCTCCAAATTATTCAGTGATCGGGCCTCCACCTTTGGATGATGACATTGTCATGAGTGAGCGATGGAGAATTCCAGGAACAAACATTAGAATGGTGTCACCATTTGTACTGATACAACATGGCATAAATCGCGTCCTCCGATCAATGAATTCTGACTTCACATTGAGAAATCCTACTCCCGGCGTCATTTTTGGAACACTACTCCTTTTGTTTGTTGCATCGATGATTATAAGGGATGCATATTACTATACTCCACCCAAGGAAGATACATTTTCTTGCATTATGTACATTGCTGTGATCATGATCTCTGTGCCTATCTATATTTTATCATGGCTTTCGGAATGCAGGTAA 642 0.391 MNMGDNNTREDHVEICIESLEAANFNNPNDIDKVCEEQVEKSEPKGECRYCHEEELVSRLEAPCGCDGSLKYAHRQCVSHWCNVKRNIICEICKQVFSPNYSVIGPPPLDDDIVMSERWRIPGTNIRMVSPFVLIQHGINRVLRSMNSDFTLRNPTPGVIFGTLLLLFVASMIIRDAYYYTPPKEDTFSCIMYIAVIMISVPIYILSWLSECR 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g00174 213 SUPERFAMILY RING/U-box 45 98 - -
Trre14g00174 213 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 11 209 IPR033275 -
Trre14g00174 213 CDD RING_CH-C4HC3_MARCH 48 94 - -
Trre14g00174 213 SMART ringv_2 47 94 IPR011016 GO:0008270
Trre14g00174 213 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 32 105 IPR013083 -
Trre14g00174 213 Pfam RING-variant domain 48 93 IPR011016 GO:0008270
Trre14g00174 213 ProSiteProfiles Zinc finger RING-CH-type profile. 40 100 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g00174 Trre-Chr14 1476145 1478232 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g00174 44 96 C3H Transcription Factor Family AT2G37950 39.286 3.94e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g00174 - - cam:101504331 317.005