Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g00171 ATGGACTTAACCCCAAACCCAACAACAACACCAACACCAACACCAACAACAATACCAACCATTGTAACAACAACAACAACTACTTTAACTAAATCACCGGAACATGAAACCTCAACCCCCACAAAAATCACAACCTCAACAACTCCAAAAATCTCACCTTTTTCCAACGGTGTCCTCAAACGCCTCCACCACAATCACCACCACCACCTTAACCACCACAACAACCACCACCTTAACCACCACAACAACCATCACCAAGTAACTGTTACTTACAAAGAATGTCTCAAAAACCATGCAGCAAACTTAGGTGGTCATGCTCTCGACGGCTGCGGCGAATTTATGACATCACCCACCGCAACATCCGCCGACCCAACATCCTTAAAATGCGCTGCGTGTGGATGTCACCGTAATTTCCACCGCCGTGAACCAGAAGAACCACCACTTTCAACCACCACACATGTCATTGAATATCAACCTCACCACCGTCATCAGCCACTTCCACCACCGCCTTTTTCCAACCGCAGCCCAAATTCCTCCTCTCCTCCGCCGATCTCCTCCACTTACTACCCTTCTGCACCTCACATGCTTCTTGCTCTCTCCACCGCCTTGCCGGAAAATGTCTCCGGACCCATGATCTCTCCTGGGTCCCACACTAGAAAACGTTTCAGAACAAAATTTACTCAAGATCAGAAAGAAAAGATGTTGAAATTTGCTGAGAAAGTTGGATGGAAGATGCAGAAAAAAGATGATGAATTTACTCATGAATTTTGTAATGAGATTGGTGTTGATCGAAGTGTTCTTAAAGTTTGGATGCATAACAACAAAAACACTTTCTCTAAGCGAGAAAACATCAACAACAACAACATCAACAACATTAACAACAACAATGAGATTAATGTTGTTGGTGTGAAGAGTTTTATGCCTTATGAAGATGAAGAACACAAGATGAAGAATAACATTAACAAAGATGATATGAATGTTGAGATTCATAGTCTTAACCATTACCAGAATGATGGTGGAGTTGTTGTTCGTGCTAATGGTTCATCTTCTTCTTGA 1056 0.4271 MDLTPNPTTTPTPTPTTIPTIVTTTTTTLTKSPEHETSTPTKITTSTTPKISPFSNGVLKRLHHNHHHHLNHHNNHHLNHHNNHHQVTVTYKECLKNHAANLGGHALDGCGEFMTSPTATSADPTSLKCAACGCHRNFHRREPEEPPLSTTTHVIEYQPHHRHQPLPPPPFSNRSPNSSSPPPISSTYYPSAPHMLLALSTALPENVSGPMISPGSHTRKRFRTKFTQDQKEKMLKFAEKVGWKMQKKDDEFTHEFCNEIGVDRSVLKVWMHNNKNTFSKRENINNNNINNINNNNEINVVGVKSFMPYEDEEHKMKNNINKDDMNVEIHSLNHYQNDGGVVVRANGSSSS 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g00171 351 MobiDBLite consensus disorder prediction 25 51 - -
Trre14g00171 351 MobiDBLite consensus disorder prediction 159 187 - -
Trre14g00171 351 Pfam ZF-HD protein dimerisation region 89 143 IPR006456 -
Trre14g00171 351 MobiDBLite consensus disorder prediction 1 20 - -
Trre14g00171 351 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 90 142 IPR006456 -
Trre14g00171 351 MobiDBLite consensus disorder prediction 162 177 - -
Trre14g00171 351 SUPERFAMILY Homeodomain-like 211 280 IPR009057 -
Trre14g00171 351 Gene3D - 208 280 - -
Trre14g00171 351 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 69 277 - -
Trre14g00171 351 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 91 142 IPR006456 -
Trre14g00171 351 FunFam Zinc-finger homeodomain protein 2 206 280 - -
Trre14g00171 351 NCBIfam homeobox domain, ZF-HD class 219 276 IPR006455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g00171 Trre-Chr14 1437106 1438161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g00171 21 275 ZF-HD Transcription Factor Family AT5G15210 50.388 3.71e-70 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Trre14g00171 ZF-HD_dimer 1.9e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g00171 - - psat:127128550 429.098