Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g00168 ATGGGAAGACCACCTTGTTGTGACAAAGAAGGTGTAAAGAAAGGACCATGGACACCTGAAGAAGATATCATACTTGTTACTTATATACAAGAACATGGTCCTGGAAATTGGAGGGCTGTTCCAACCAAGACAGGGTTGTCAAGATGCAGCAAGAGTTGTAGACTTAGATGGACTAATTACTTAAGGCCAGGAATCAAAAGGGGTAACTTCACTGAACAAGAGGAGAAGATGATTATCCATCTTCAAGATCTTTTAGGAAATAGATGGGCTGCAATAGCATCATATCTTCCACAAAGAACAGATAATGACATAAAAAACTATTGGAATACTCATTTGAAAAAGAAGCTCAAGAAAATGCAAGCAGGTAATAATATTAATAATAATTCTGAAGGAAATTTTGAAGAAGAAAATTTTTCAGCATCACAAAGAATTCCTAGAGGTCAATGGGAAAGAAGACTTCAAACAGATATTCAAATGGCCAAAAAAGCACTTAATGAAGCACTTTCAGTTTCACCACAAAAATTATCTTCTTCTAATTTTTCAGCTTCAAACCTTTCTAATAGTAACTCTATTTCTTCCACTAAAGAATTACCACAATCTATTTGCTATGCTTCAAGTGCTGATAACATAGCTAGGTTACTTAAGGGTTGGATGAAAAATCCAATAAAATCATCTAGAAGTACTAATTCATCTGTGGCACAAAATTCCTTCAACAACATTGATTGTGTTTCTAGTAGTGGAACAAAGGGTGAAAATGAAATATTATCTGAGACTTTTGAATCTTTGTTTGGTTTTGAGTCTTTGGAATCTTTGGAGTCTTCGAATTCCGAATTCTCTCATCAATCATTGTCGCCGGACGCAACGGTTTTACAAGATGAAAGTAAGCCGGAAGTTGGTTCCGAAACAATGCCCTTTTCTTTGCTTGAGAAATGGCTTCTTGATGAAGCTAGTTGTCCTGAGAAAGTGGGATTAGGTTGTGGTGATCATGCTCAAGTTTTCTAG 1002 0.3603 MGRPPCCDKEGVKKGPWTPEEDIILVTYIQEHGPGNWRAVPTKTGLSRCSKSCRLRWTNYLRPGIKRGNFTEQEEKMIIHLQDLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKMQAGNNINNNSEGNFEEENFSASQRIPRGQWERRLQTDIQMAKKALNEALSVSPQKLSSSNFSASNLSNSNSISSTKELPQSICYASSADNIARLLKGWMKNPIKSSRSTNSSVAQNSFNNIDCVSSSGTKGENEILSETFESLFGFESLESLESSNSEFSHQSLSPDATVLQDESKPEVGSETMPFSLLEKWLLDEASCPEKVGLGCGDHAQVF 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g00168 333 Gene3D - 13 66 - -
Trre14g00168 333 CDD SANT 69 112 IPR001005 -
Trre14g00168 333 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Trre14g00168 333 CDD SANT 16 61 IPR001005 -
Trre14g00168 333 Gene3D - 69 140 - -
Trre14g00168 333 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 241 - -
Trre14g00168 333 FunFam MYB-related transcription factor 13 66 - -
Trre14g00168 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Trre14g00168 333 FunFam Transcription factor MYB30 68 126 - -
Trre14g00168 333 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Trre14g00168 333 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Trre14g00168 333 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Trre14g00168 333 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Trre14g00168 333 SMART sant 66 114 IPR001005 -
Trre14g00168 333 SMART sant 13 63 IPR001005 -
Trre14g00168 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Trre14g00168 333 MobiDBLite consensus disorder prediction 276 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g00168 Trre-Chr14 1409759 1411503 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g00168 1 333 MYB Transcription Factor Family AT5G62470 50.000 6.70e-108 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre14g00168 Myb_DNA-binding 1.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g00168 K09422 - gmx:778080 454.521