Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g00163 ATGTCTAGCAGAAGATCAAGGCAACAATCAGGAGGGTCTACAAGAATCTCTGATGATCAAATTATTGATCTTGTTTGCAAGTTGCGTCAACTTGTTCCAGAAATTCGCAATAGGCGCTCCGACAAGGTACCAGCTTCTAAGGTCCTACAAGAAACTTGCAACTTTATCAGAAACTTACAAAGAGAGGTTGATGATTTAAGCATGCGATTGTCTCAATTGTTGGCTACTATTGATGCTGATAGTGCTGAAGCTTCTATCATTAGGAGCCTACTTAACCAATGA 282 0.4007 MSSRRSRQQSGGSTRISDDQIIDLVCKLRQLVPEIRNRRSDKVPASKVLQETCNFIRNLQREVDDLSMRLSQLLATIDADSAEASIIRSLLNQ 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g00163 93 Gene3D - 15 88 IPR036638 GO:0046983
Trre14g00163 93 PANTHER TRANSCRIPTION FACTOR PRE 1 91 IPR044293 GO:0006355|GO:0040008|GO:0046983
Trre14g00163 93 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 5 59 IPR011598 GO:0046983
Trre14g00163 93 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 23 79 IPR036638 GO:0046983
Trre14g00163 93 FunFam Transcription factor ILI6 5 88 - -
Trre14g00163 93 Coils Coil 56 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g00163 Trre-Chr14 1318113 1319135 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g00163 13 91 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G39860 71.250 1.02e-33 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g00163 - - cill:122307724 144.05