Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g00160 ATGAACTCTTTAGTTTTTAATTTCTATGGACCAAAAATGTGGATAGTCTTTGTTCTTACTATTTTCGGTTTGATTGCTGTGACTGAATCTTCAACATTGACATCTCAACTTGAAATGGAAGAAAATGCTATATTGAATAGTGGATGGTGGAACACTTCTGATGCTAGCTACAACATCTCCAATCGGTGTAATTGGGATCAGATATTTATTTGCAACAAGGCTGGAAGCATAACAAATATCAGCATAACAGAATATGAAAATAGGATTGACTTTGCAACATTGAACTTGACTGTTTTCCACAATTTAGAAAGCCTTGTTATCACGTCTGCTGGACTAGAAGGGACTATCCCAAAAGAAATTGGTCTTCTCTCTAACCTTATTTATCTTGATCTGTCTGAAAATTCTCTTGTAGGTAAGATACCTCCTTCACTTGGAAATCTCACAAAACTCACTCATCTTGATCTGTCTGGAAATTCTCTTGTAGGTGAGATACCTCCTTCACTAGGAAATCTAACAAAACTCACTTATCTTGATCTATATGAAAATTCTCTTGTAGGTGAGATACCTTCTTCACTAGGAAATCTCACAAATCTCACTGGTCTTTATCTATCTAGAAATTCTCTTGTAGGTGAGATACCTCCTTCTCTAGGAAATCTTACCAAACTCACTGATCTTTATCTATCTAGAAATTCTCTTGTAGGTGAGATACCTCCTTCACTAGGAAATCTCACAAAACTCACTCATCTTTATCTATATAACAATTCTCTTGTAGGTGAGATACCTTCTTCACTAGGAAATCTCACAAAACTCACTCATCTTTATCTATATAACAATTCTCTTGTAGGTGAGATACCTTCTTCACTAGAAAATCTCACAAAACTCACTCATCTTTATCTATATAACAATTCTCTTGTAGGTGAGATACCTTCTTCTCTAGGAAACCTTAGAAAATTAACTTGGTTAGATACATCTTACAACAAGCTTCAAGGTTCCATTCCTCATGAGTTGGGATTCATTAAAAGTCTAGTTTTATTAATTCTATCTCATAACTTCTTTAATGGTAGTTTTCCCATTTCCATCATAGGAAATCTCACACAATTAGTGTACCTGGACATCTCTCACAACACCATTCAAGGTTCCATTCCTTTTGAGTTGGGGTTCTTAAATAATCTGACAAGATTAGATCTATCATACAATAGATTCGATAGAAACTTGCCTATTTCCATTACAAATCTCACACAATTAGAATACCTTGACATTTCTCACAATGATCTCAATGGTTCCTTCTCATATTCTAAGGTTGACCAATTATATAATTTAAAATACATTGATATTTCCCACAATTTACTCCTTGGTATCCTTCCTTCCAGTTTTTTCCTATCGCCAAATTATGAAATTTCCATTGACCTCAGTAACAACCTCATCAGTGGTGAAATCCCTTCTCAGATTGGACATTTTCAAAATCTTAATTTAAGCAATAATAATCTCACTGGAATAGTTCCTGCATCTCTCTGTAATGGATATAATATAGACATTTCTAACAATTGTTTGAAGGGTCCCCTTCCGAATTGTTTTGGTTCTTTAACAACAATAGTAAATACGAACAATAATGTATGTATCGACACTTCATATAACCAATTCCAACATTTGCCACCTCACAAGAAAAATAACAAAGTAATACATGATGTTGTCATTGTCCTTCCTATCATTATTATTCTAATATTAGCCTTCTCACTTGTCTTGTGCTTGAAACTTCGTCATAATTATATGACGAACAAGCATGCAAACAAAATCACTACAAAAAATGGAGATCTGTTTTGTATATGGAATTATGATGGAAAAATAGCACATGATGACATCATAAGAGCAACTGAAGACTTTGACATGAGATATTGCATTGGAACTGGAGCATATGGAAGTGTTTACAAGGCACAATTACCATCTGGAAATGTTGTTGCCTTAAAAAAACTTCATGGCTATGAGGCCGAGGTGCCAGCTTTTGATGAGAGTTTTAGAAATGAAGTGAAAATATTATCCGAAATAAAGCACCGGCATATTGTTAAGCTTTATGGGTTCTGTTTGCACAAAAGAATCATGTTTTTGATTTATCAATACATGGAGAGAGGAAGCTTGTTTTCTGTCTTGTATGATGATGTTGAGGCCGTCGAATTCAAATGGAGAAAAAGGGTTAACATTGTTAAAGGAGTTGCATCTGCTCTATCATATCTTCATCATGATTTTACTTCTCCAATAGTGCATAGAGACATATCTAGTGGCAATATCTTGCTGAACAATGACTGGCAGCCTAGTGTTGCTGATTTTGGCACAGCTCGACTCCTTCAACTAGATTCATCCAATCGAACAATAGTAGCCGGAACAGTTGGATACATAGCTCCTGAGCTTGCTTATACTATGGTTGTGAGTGAAAAGTGCGATGTATATAGCTTTGGAGTAGTGACACTAGAAACTTTGATGGGAAGGCACCCTCAGGAAATGTTGTCGACACTTCAATTAGCATCAACTCAAAGCATGAAATTATGTCAAGTATTAGACCAACGTCTCCCATTTCCAAATAATGCGATGGTTTTACTTGACATAATTCGTGTAGCCGTAATAGCATTTGCATGCTTAAATTTCAATCCTAGTTCTCGACCAACAATGAAACTTGTATCACAGAGTTTTGCCACTGAGCTTACACCATTAACCATTCCTTTGAGTGAGATTTCAATGCAGCAACTTATGAGTCAAGAACTCAAAGCATTGTTTCATATTGTCAAACATTGA 2784 0.3531 MNSLVFNFYGPKMWIVFVLTIFGLIAVTESSTLTSQLEMEENAILNSGWWNTSDASYNISNRCNWDQIFICNKAGSITNISITEYENRIDFATLNLTVFHNLESLVITSAGLEGTIPKEIGLLSNLIYLDLSENSLVGKIPPSLGNLTKLTHLDLSGNSLVGEIPPSLGNLTKLTYLDLYENSLVGEIPSSLGNLTNLTGLYLSRNSLVGEIPPSLGNLTKLTDLYLSRNSLVGEIPPSLGNLTKLTHLYLYNNSLVGEIPSSLGNLTKLTHLYLYNNSLVGEIPSSLENLTKLTHLYLYNNSLVGEIPSSLGNLRKLTWLDTSYNKLQGSIPHELGFIKSLVLLILSHNFFNGSFPISIIGNLTQLVYLDISHNTIQGSIPFELGFLNNLTRLDLSYNRFDRNLPISITNLTQLEYLDISHNDLNGSFSYSKVDQLYNLKYIDISHNLLLGILPSSFFLSPNYEISIDLSNNLISGEIPSQIGHFQNLNLSNNNLTGIVPASLCNGYNIDISNNCLKGPLPNCFGSLTTIVNTNNNVCIDTSYNQFQHLPPHKKNNKVIHDVVIVLPIIIILILAFSLVLCLKLRHNYMTNKHANKITTKNGDLFCIWNYDGKIAHDDIIRATEDFDMRYCIGTGAYGSVYKAQLPSGNVVALKKLHGYEAEVPAFDESFRNEVKILSEIKHRHIVKLYGFCLHKRIMFLIYQYMERGSLFSVLYDDVEAVEFKWRKRVNIVKGVASALSYLHHDFTSPIVHRDISSGNILLNNDWQPSVADFGTARLLQLDSSNRTIVAGTVGYIAPELAYTMVVSEKCDVYSFGVVTLETLMGRHPQEMLSTLQLASTQSMKLCQVLDQRLPFPNNAMVLLDIIRVAVIAFACLNFNPSSRPTMKLVSQSFATELTPLTIPLSEISMQQLMSQELKALFHIVKH 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g00160 927 Gene3D Phosphorylase Kinase; domain 1 592 705 - -
Trre14g00160 927 FunFam MDIS1-interacting receptor like kinase 2 706 900 - -
Trre14g00160 927 Gene3D Ribonuclease Inhibitor 384 466 IPR032675 -
Trre14g00160 927 SUPERFAMILY RNI-like 308 530 - -
Trre14g00160 927 SUPERFAMILY L domain-like 90 358 - -
Trre14g00160 927 Pfam Protein kinase domain 633 891 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre14g00160 927 Pfam Leucine Rich Repeat 439 458 IPR001611 GO:0005515
Trre14g00160 927 Pfam Leucine Rich Repeat 221 243 IPR001611 GO:0005515
Trre14g00160 927 SMART LRR_sd22_2 364 385 - -
Trre14g00160 927 SMART LRR_sd22_2 219 245 - -
Trre14g00160 927 SMART LRR_sd22_2 437 472 - -
Trre14g00160 927 SMART LRR_sd22_2 147 166 - -
Trre14g00160 927 SMART LRR_sd22_2 267 290 - -
Trre14g00160 927 SMART LRR_sd22_2 171 197 - -
Trre14g00160 927 SMART LRR_sd22_2 388 414 - -
Trre14g00160 927 SMART LRR_sd22_2 291 317 - -
Trre14g00160 927 SUPERFAMILY Protein kinase-like (PK-like) 615 891 IPR011009 -
Trre14g00160 927 PRINTS Leucine-rich repeat signature 150 163 - -
Trre14g00160 927 PRINTS Leucine-rich repeat signature 412 425 - -
Trre14g00160 927 ProSitePatterns Protein kinases ATP-binding region signature. 633 655 IPR017441 GO:0005524
Trre14g00160 927 SMART LRR_typ_2 388 412 IPR003591 -
Trre14g00160 927 SMART LRR_typ_2 267 290 IPR003591 -
Trre14g00160 927 SMART LRR_typ_2 195 218 IPR003591 -
Trre14g00160 927 SMART LRR_typ_2 219 242 IPR003591 -
Trre14g00160 927 SMART LRR_typ_2 243 266 IPR003591 -
Trre14g00160 927 SMART LRR_typ_2 147 171 IPR003591 -
Trre14g00160 927 SMART LRR_typ_2 123 146 IPR003591 -
Trre14g00160 927 SMART LRR_typ_2 483 506 IPR003591 -
Trre14g00160 927 SMART LRR_typ_2 437 460 IPR003591 -
Trre14g00160 927 SMART LRR_typ_2 291 315 IPR003591 -
Trre14g00160 927 Gene3D Ribonuclease Inhibitor 187 283 IPR032675 -
Trre14g00160 927 ProSiteProfiles Protein kinase domain profile. 627 895 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre14g00160 927 Gene3D Ribonuclease Inhibitor 284 383 IPR032675 -
Trre14g00160 927 FunFam Leucine-rich repeat receptor-like protein kinase TDR 196 465 - -
Trre14g00160 927 Pfam Leucine rich repeat 245 304 IPR001611 GO:0005515
Trre14g00160 927 Pfam Leucine rich repeat 101 160 IPR001611 GO:0005515
Trre14g00160 927 Pfam Leucine rich repeat 366 425 IPR001611 GO:0005515
Trre14g00160 927 ProSitePatterns Tyrosine protein kinases specific active-site signature. 751 763 IPR008266 GO:0004672|GO:0006468
Trre14g00160 927 FunFam Nuclear pore complex protein NUP107 31 190 - -
Trre14g00160 927 Gene3D Ribonuclease Inhibitor 467 591 IPR032675 -
Trre14g00160 927 Gene3D Ribonuclease Inhibitor 31 186 IPR032675 -
Trre14g00160 927 Gene3D Transferase(Phosphotransferase) domain 1 706 900 - -
Trre14g00160 927 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 590 705 - -
Trre14g00160 927 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 242 895 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g00160 Trre-Chr14 1274133 1277891 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g00160 95 799 Receptor kinase-like Gene Family AT4G08850 40.800 1.73e-158 489
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre14g00160 Pkinase 4.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g00160 - - mtr:25501173 1004.97