Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g00140 ATGTTGATAGAGAATGAAGTCATGTGTTTGAGAAAGAGTATGGAAGAAAAAGATGTAAAAGGAGCACGTTGTGTTAAGAGAAAAAGAAGAGAGCATGCTATTGGACCAATCATAGATGATGATGATGATAACCACAATAAGAAGATGATAAAGCAACATGTTGGTGAAAATTCTACAACTAACACTACAAAGAGAAGCTCAAGATTTCGTGGTGTTAGCAGGCATAGATGGACCGGTCGATTTGAAGCTCACTTGTGGGACAAGCTTTCTTGGAACATAACACAAAAGAAGAAAGGGAAACAAGTTTACCTTGGGGCTTATGATGAAGAAGAATCTGCTGCAAGAGCATATGATTTAGCTGCACTTAAGTATTGGGGAACATCAACTTTCACTAATTTTCAGATATCAGATTATGAAAAAGAGATAGAAATTATGAAAACCATGACCAAAGAAGAGTACTTGGCCACATTAAGAAGAAAGAGCAGTGGCTTTTCAAGAGGTGTCTCAAAGTATAGAGGTGTTGCAAGGCACCACCATAATGGTAGATGGGAAGCAAGGATAGGGAGAGTTTTTGGAAACAAATATCTTTATCTTGGAACCTATAGTACACAAGAAGAAGCTGCACGTGCTTATGACATAGCTGCAATTGAATACAGAGGAATTCATGCTGTAACCAACTTTGAATTAAGCAGTTACATAAAATGGTTGAAGCCAGAAAGTGATAAAGAAGAAAAACATGAATCACAAGCACTACCAAAAGAGTCACAAACAATGGAATCTCCAAATAATTCTACTCTATTACAAGAGTCAAAGTTATTAGCCCTTCAAAAGAGCTTTTTCATTCCAAATTACATTAATTCCAATGAAAAGCAAGAATCTTCCTCTTCGTTTGAAAGCAAAAACTACCATTTCTTGAGCAACAAGTCAACTTCTCCAACTGCGCTTAGTCTTCTCCTTCGCTCTTCGTTATTTAGAGAATTACTTGAAAAGAATTCAAATGTATCCGAGGATGAAGTCACAAGCGAGCAACATCAAAATCGACAACAACAAATAGCTAGTGATGATGAACTAGGAGGGACCTTCTATGATGGTATTGACAATATCTCATTTGACTTTGATCCTAATATATGCAACATAGAATTACAAGAAAGAGACTTGCATTCAATATTTTGTACATAA 1179 0.3613 MLIENEVMCLRKSMEEKDVKGARCVKRKRREHAIGPIIDDDDDNHNKKMIKQHVGENSTTNTTKRSSRFRGVSRHRWTGRFEAHLWDKLSWNITQKKKGKQVYLGAYDEEESAARAYDLAALKYWGTSTFTNFQISDYEKEIEIMKTMTKEEYLATLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGIHAVTNFELSSYIKWLKPESDKEEKHESQALPKESQTMESPNNSTLLQESKLLALQKSFFIPNYINSNEKQESSSSFESKNYHFLSNKSTSPTALSLLLRSSLFRELLEKNSNVSEDEVTSEQHQNRQQQIASDDELGGTFYDGIDNISFDFDPNICNIELQERDLHSIFCT 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g00140 392 PRINTS Ethylene responsive element binding protein signature 69 80 IPR001471 GO:0003700|GO:0006355
Trre14g00140 392 PRINTS Ethylene responsive element binding protein signature 210 230 IPR001471 GO:0003700|GO:0006355
Trre14g00140 392 Pfam AP2 domain 67 126 IPR001471 GO:0003700|GO:0006355
Trre14g00140 392 Pfam AP2 domain 169 220 IPR001471 GO:0003700|GO:0006355
Trre14g00140 392 ProSiteProfiles AP2/ERF domain profile. 68 134 IPR001471 GO:0003700|GO:0006355
Trre14g00140 392 MobiDBLite consensus disorder prediction 334 357 - -
Trre14g00140 392 FunFam AP2-like ethylene-responsive transcription factor 67 136 - -
Trre14g00140 392 SUPERFAMILY DNA-binding domain 67 135 IPR016177 GO:0003677
Trre14g00140 392 CDD AP2 169 230 IPR001471 GO:0003700|GO:0006355
Trre14g00140 392 MobiDBLite consensus disorder prediction 243 263 - -
Trre14g00140 392 CDD AP2 67 136 IPR001471 GO:0003700|GO:0006355
Trre14g00140 392 SMART rav1_2 68 140 IPR001471 GO:0003700|GO:0006355
Trre14g00140 392 SMART rav1_2 170 234 IPR001471 GO:0003700|GO:0006355
Trre14g00140 392 FunFam AP2-like ethylene-responsive transcription factor 169 230 - -
Trre14g00140 392 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 51 299 - -
Trre14g00140 392 Gene3D AP2/ERF domain 169 230 IPR036955 GO:0003700|GO:0006355
Trre14g00140 392 Gene3D AP2/ERF domain 67 136 IPR036955 GO:0003700|GO:0006355
Trre14g00140 392 SUPERFAMILY DNA-binding domain 169 229 IPR016177 GO:0003677
Trre14g00140 392 ProSiteProfiles AP2/ERF domain profile. 170 228 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g00140 Trre-Chr14 1081275 1084387 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g00140 64 232 AP2-EREBP Transcription Factor Family AT5G57390 69.822 8.72e-84 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Trre14g00140 AP2 1.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g00140 - - gmx:100792612 511.531