Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g00139 ATGGCAATGTTGATAGAGAATGAAGTCATGTGTTTGAGAAAGAGTATGGAAGAAAAAGATGTAAAAGGAGCACGTTGTGTTAAGAGAAAAAGAAGAGAGCATGCTATTGGACCAATCATAGATGATGATGATGATAACCACAATAAGAAGATGATAAAGCAACATGTTGGTGAAAATTCTACAACTAACACTACAAAGAGAAGCTCAAGATTTCGTGGTGTTAGCAGGCATAGATGGACCGGTCGATTTGAAGCTCACTTGTGGGACAAGCTTTCTTGGAACATAACACAAAAGAAGAAAGGGAAACAAGGGGCTTATGATGAAGAAGAATCTGCTGCAAGAGCATATGATTTAGCTGCACTTAAGTATTGGGGAACATCAACTTTCACTAATTTTCAGATATCAGATTATGAAAAAGAGATAGAAATTATGAAAACCATGACCAAAGAAGAGTACTTGGCCACATTAAGAAGAAAGAGCAGTGGCTTTTCAAGAGGTGTCTCAAAGTATAGAGGTGTTGCAAGGCACCACCATAATGGTAGATGGGAAGCAAGGATAGGGAGAGTTTTTGGAAACAAATATCTTTATCTTGGAACCTATAGTACACAAGAAGAAGCTGCACGTGCTTATGACATAGCTGCAATTGAATACAGAGGAATTCATGCTGTAACCAACTTTGAATTAAGCAGTTACATAAAATGGTTGAAGCCAGAAAGTGATAAAGAAGAAAAACATGAATCACAAGCACTACCAAAAGAGTCACAAACAATGGAATCTCCAAATAATTCTACTCTATTACAAGAGTCAAAGTTATTAGCCCTTCAAAAGAGCTTTTTCATTCCAAATTACATTAATTCCAATGAAAAGCAAGAATCTTCCTCTTCGTTTGAAAGCAAAAACTACCATTTCTTGAGCAACAAGTCAACTTCTCCAACTGCGCTTAGTCTTCTCCTTCGCTCTTCGTTATTTAGAGAATTACTTGAAAAGAATTCAAATGTATCCGAGGATGAAGTCACAAGCGAGCAACATCAAAATCGACAACAACAAATAGCTAGTGATGATGAACTAGGAGGGACCTTCTATGATGGTATTGACAATATCTCATTTGACTTTGATCCTAATATATGCAACATAGAATTACAAGAAAGAGACTTGCATTCAATATTTTGTACATAA 1176 0.3622 MAMLIENEVMCLRKSMEEKDVKGARCVKRKRREHAIGPIIDDDDDNHNKKMIKQHVGENSTTNTTKRSSRFRGVSRHRWTGRFEAHLWDKLSWNITQKKKGKQGAYDEEESAARAYDLAALKYWGTSTFTNFQISDYEKEIEIMKTMTKEEYLATLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGIHAVTNFELSSYIKWLKPESDKEEKHESQALPKESQTMESPNNSTLLQESKLLALQKSFFIPNYINSNEKQESSSSFESKNYHFLSNKSTSPTALSLLLRSSLFRELLEKNSNVSEDEVTSEQHQNRQQQIASDDELGGTFYDGIDNISFDFDPNICNIELQERDLHSIFCT 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g00139 391 SMART rav1_2 70 139 IPR001471 GO:0003700|GO:0006355
Trre14g00139 391 SMART rav1_2 169 233 IPR001471 GO:0003700|GO:0006355
Trre14g00139 391 FunFam AP2-like ethylene-responsive transcription factor 168 229 - -
Trre14g00139 391 Pfam AP2 domain 69 125 IPR001471 GO:0003700|GO:0006355
Trre14g00139 391 Pfam AP2 domain 168 219 IPR001471 GO:0003700|GO:0006355
Trre14g00139 391 CDD AP2 168 229 IPR001471 GO:0003700|GO:0006355
Trre14g00139 391 Gene3D AP2/ERF domain 168 229 IPR036955 GO:0003700|GO:0006355
Trre14g00139 391 Gene3D AP2/ERF domain 69 135 IPR036955 GO:0003700|GO:0006355
Trre14g00139 391 SUPERFAMILY DNA-binding domain 168 228 IPR016177 GO:0003677
Trre14g00139 391 PRINTS Ethylene responsive element binding protein signature 71 82 IPR001471 GO:0003700|GO:0006355
Trre14g00139 391 PRINTS Ethylene responsive element binding protein signature 209 229 IPR001471 GO:0003700|GO:0006355
Trre14g00139 391 CDD AP2 69 135 IPR001471 GO:0003700|GO:0006355
Trre14g00139 391 MobiDBLite consensus disorder prediction 242 262 - -
Trre14g00139 391 ProSiteProfiles AP2/ERF domain profile. 169 227 IPR001471 GO:0003700|GO:0006355
Trre14g00139 391 ProSiteProfiles AP2/ERF domain profile. 70 133 IPR001471 GO:0003700|GO:0006355
Trre14g00139 391 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 53 298 - -
Trre14g00139 391 SUPERFAMILY DNA-binding domain 69 134 IPR016177 GO:0003677
Trre14g00139 391 MobiDBLite consensus disorder prediction 333 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g00139 Trre-Chr14 1081275 1084393 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g00139 66 231 AP2-EREBP Transcription Factor Family AT5G57390 68.047 2.85e-79 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Trre14g00139 AP2 1.4e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g00139 - - gmx:100792612 503.056