Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g00128 ATGGGCTGTCCTGGGAGCACTCCTCTTCATCTAGCAGCTAAAGGAGGCTCTCTAGATTGCATCCGTGAACTATTGGCATGGGATGCAGATCGTCTTCAACGTGATGCATCTGGGCGGATACCGTATGTGGTTGCTCTGAAGCACAAACACGGAGCATGTGCAGCACTGTTAAATATTGCATCTGCACAGCCTCTTGTCTGGCCATCATCTTTGAAGATAATCAGTGAGCTTAATCCAGAGGCCAAATTATTATTAGAGCAGGCCTTGATGGACGCGAATAAGGAAAGGGAGAAAAATATATTGAAAGGTAGTCCTTACTCTCTTCCATCTCCAACACACTCTGATCAGATGGATGACAATATCTCTGAGGTAATTTAA 378 0.4497 MGCPGSTPLHLAAKGGSLDCIRELLAWDADRLQRDASGRIPYVVALKHKHGACAALLNIASAQPLVWPSSLKIISELNPEAKLLLEQALMDANKEREKNILKGSPYSLPSPTHSDQMDDNISEVI 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g00128 125 PANTHER HOMEOBOX PROTEIN WARIAI 3 99 - -
Trre14g00128 125 ProSiteProfiles Ankyrin repeat profile. 4 36 IPR002110 GO:0005515
Trre14g00128 125 Gene3D - 2 70 IPR036770 -
Trre14g00128 125 MobiDBLite consensus disorder prediction 105 125 - -
Trre14g00128 125 Pfam Ankyrin repeats (many copies) 5 42 IPR002110 GO:0005515
Trre14g00128 125 MobiDBLite consensus disorder prediction 100 125 - -
Trre14g00128 125 SUPERFAMILY Ankyrin repeat 5 62 IPR036770 -
Trre14g00128 125 ProSiteProfiles Ankyrin repeat region circular profile. 4 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g00128 Trre-Chr14 1013061 1014173 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g00128 5 57 Ion Channels AT2G26650 41.509 7.07e-07 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g00128 - - gmx:100800611 228.024