Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g00109 ATGAACATGGATAACCAAAGAAAGAAATCTTCGGGGCGCAAGAAGATTGAGATCAAGAAGCTTGACAAACAATCCAACAAACAAGTCACGTTCTCGAAAAGAAGACAAGGTTTGTTCAGAAAAGCAAGCGAACTTTGCGTTTTATGTGACGTTCATGCAGCCATCATTGTGTTTTCTCCTGCCGACAAACTATACTGTTTCGGTCAACCAAATACCTACGCAATCCTCGATAGCTATGTAAGAGGAACCACTGAGTTCGAGGATTTAAAGTCAGGAGAAAATTCTCAGAACTACGAAGAGTACAATAAAGAATATGAAGAGGCGTTGAAGATGTTGGAATTGGAAAAGAAGAAACTTGCAGATGTTGAAAATTTGGCTAAGTTTTGGAACACATTTGATTGGTGGAATGATTCAATTGATGATATGAGTAGTGATCAACTTGAGCAATTCATGGTGTCTATTTATGAATTAAGGAAGAAGCTAATTGAAAGAGTTGATGAACCTAATGTAGAATTATTTGCTTTAGATGAATAA 534 0.367 MNMDNQRKKSSGRKKIEIKKLDKQSNKQVTFSKRRQGLFRKASELCVLCDVHAAIIVFSPADKLYCFGQPNTYAILDSYVRGTTEFEDLKSGENSQNYEEYNKEYEEALKMLELEKKKLADVENLAKFWNTFDWWNDSIDDMSSDQLEQFMVSIYELRKKLIERVDEPNVELFALDE 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g00109 177 PRINTS MADS domain signature 13 33 IPR002100 GO:0003677|GO:0046983
Trre14g00109 177 PRINTS MADS domain signature 33 48 IPR002100 GO:0003677|GO:0046983
Trre14g00109 177 PRINTS MADS domain signature 48 69 IPR002100 GO:0003677|GO:0046983
Trre14g00109 177 PANTHER MADS BOX PROTEIN 13 163 - -
Trre14g00109 177 Gene3D - 23 117 IPR036879 GO:0003677|GO:0046983
Trre14g00109 177 Coils Coil 95 125 - -
Trre14g00109 177 FunFam Agamous-like MADS-box protein AGL62 23 88 - -
Trre14g00109 177 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 22 67 IPR002100 GO:0003677|GO:0046983
Trre14g00109 177 SUPERFAMILY SRF-like 12 83 IPR036879 GO:0003677|GO:0046983
Trre14g00109 177 SMART madsneu2 11 70 IPR002100 GO:0003677|GO:0046983
Trre14g00109 177 ProSiteProfiles MADS-box domain profile. 11 71 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g00109 Trre-Chr14 869016 869549 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g00109 8 159 Type I MADS-box Gene Family AT5G60440 38.365 3.88e-33 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre14g00109 SRF-TF 1.8e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g00109 - - cam:101502875 224.942