Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g00097 ATGGTTTCGCTGAAATTGCAGAAGAGGCTATCAGCTAGCGTGCTGAAATGCGGTAGAGGAAAGGTTTGGCTTGATCCCAATGAAGTCAATGAAATCTCCATGGCCAATTCCAGACAAAACATTAGGAAGTTGGTTAAGGATGGGTTTATTATTAGGAAGCCAACCAAGATTCACTCCCGTTCACGTGCTCGCAGGATGAAGGAAGCTAAGAGGAAAGGACGACACTCTGGATACGGTAAGCGCAAGGGTACAAGGGAGGCAAGACTTCCTACCAAAATTCTTTGGATGAGGAGGATGCGTGTGCTCAGACGACTGCTCCGTAAGTACAGGGAATCAAAAAAAATTGACAAACATATGTACCATGATATGTACATGAAGGTGAAGGGTAATGTTTTTAAGAACAAGAGAGTCTTGATGGAGAGCATTCACAAGTCTAAGGCCGAGAAGGCAAGAGAGAAGACTTTGTCTGACCAGTTTGAGGCAAAGCGTGCAAAGAACAAGGCCAGCAGGGAAAGGAAATTTGCTAGGCGTGAGGAAAGATTCGCTCAAGGTCCTGGTGAAAAGCAACCAGCGTCCACTGCTCCACCTGCCACAACACCCCAACCTGCCCAGGTGCCAAAGAAAACCAAGAAGTGA 636 0.4654 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKFARREERFAQGPGEKQPASTAPPATTPQPAQVPKKTKK 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g00097 211 MobiDBLite consensus disorder prediction 144 211 - -
Trre14g00097 211 FunFam Ribosomal protein L19 1 56 - -
Trre14g00097 211 Gene3D - 2 56 IPR015972 GO:0003735|GO:0005840|GO:0006412
Trre14g00097 211 MobiDBLite consensus disorder prediction 144 184 - -
Trre14g00097 211 MobiDBLite consensus disorder prediction 57 85 - -
Trre14g00097 211 CDD Ribosomal_L19e_E 4 167 IPR033935 GO:0003735|GO:0022625
Trre14g00097 211 ProSitePatterns Ribosomal protein L19e signature. 7 26 IPR023638 -
Trre14g00097 211 Hamap 50S ribosomal protein L19e [rpl19e]. 3 149 IPR000196 GO:0003735|GO:0005840|GO:0006412
Trre14g00097 211 Gene3D - 57 189 - -
Trre14g00097 211 SMART Ribosomal_L19e_2 3 146 IPR000196 GO:0003735|GO:0005840|GO:0006412
Trre14g00097 211 Pfam Ribosomal protein L19e 4 145 IPR000196 GO:0003735|GO:0005840|GO:0006412
Trre14g00097 211 SUPERFAMILY Ribosomal protein L19 (L19e) 3 144 IPR035970 GO:0003735|GO:0005840|GO:0006412
Trre14g00097 211 MobiDBLite consensus disorder prediction 57 79 - -
Trre14g00097 211 PANTHER 60S RIBOSOMAL PROTEIN L19 1 188 IPR039547 GO:0003723|GO:0003735|GO:0022625
Trre14g00097 211 FunFam Ribosomal protein L19 57 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g00097 Trre-Chr14 800698 802606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g00097 1 211 Cytoplasmic Ribosomal Protein Gene Family AT3G16780 84.360 6.51e-128 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g00097 K02885 - gmx:100527501 366.311