Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g00078 ATGCGGATGAGTTGTAACGGTTGTAGAGTACTAAGAAAAGGTTGTAGTGAAAATTGTAGCATAAGACCTTGTTTACAATGGATCAAAAACCCTGAATCACAAGCTAATGCCACCGTCTTTCTTGCTAAATTTTACGGTCGTGCCGGACTCATGAACCTTGTTAACGCCGGCCCTGAACATCTTCGTCCAGCGATTTTTCGTTCATTGTTGTACGAAGCATGTGGTCGAATAGTGAACCCAATTTACGGTTCAGTTGGTTTATTATGGTCTGGGAGCTGGCAGCTATGTCAAGCCGCGGTGGAAGCCGTTTTGAAAGGCGCGCCGATTACGCCGATAACTTCGGAAGCAGCTGCTAATGGGAGGGGCCCACCACTCAAAGCCTACGACATACGCCATGTCTCAAAAGACGAGAACTCGGCCGCTTCAAACGAGTTAACTCACCAACGAGTCAAGACTCGGTCTCGAAAGCGGTCGAACTTAGCCAAGCCGAAAGAAACCACTACTGATGAGGAAAAAAGTAGTAATGATAATAAGGGAGTTGAATCCGGTTCAGTTGAACCGGTTGAAGAGGTGATGAACCGGTCAGCAAGTCACGAGTCGTCCATTAGCCACCAGTCTGAAGCGGTCAATGCGGCGGCTGTGGAGGGAGAGAGTAAAGAAAGTGAGAGTGAAACTTCGATGATCTTATTTAGAGATGAACCGGAGAAAGAATCGAACCGGAATTTGAAGCGGCCGGACCGAACCAGTGAAAGTGGAGAGGAAAATGTTGGTTTGGAACTTACTCTTGGGCTTGAACCGGTTTCACGTGTTTATCACGTGGTTCCAGTGAAGAAAAGAAGGGTTGAATTGAAGGATTGTGGTGGTGGTTCGTGGAATGTGGAGCTTGGACTTCAATACCCGGCTTAG 906 0.4746 MRMSCNGCRVLRKGCSENCSIRPCLQWIKNPESQANATVFLAKFYGRAGLMNLVNAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPITSEAAANGRGPPLKAYDIRHVSKDENSAASNELTHQRVKTRSRKRSNLAKPKETTTDEEKSSNDNKGVESGSVEPVEEVMNRSASHESSISHQSEAVNAAAVEGESKESESETSMILFRDEPEKESNRNLKRPDRTSESGEENVGLELTLGLEPVSRVYHVVPVKKRRVELKDCGGGSWNVELGLQYPA 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g00078 301 MobiDBLite consensus disorder prediction 194 208 - -
Trre14g00078 301 MobiDBLite consensus disorder prediction 136 257 - -
Trre14g00078 301 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Trre14g00078 301 MobiDBLite consensus disorder prediction 159 177 - -
Trre14g00078 301 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 3 213 - -
Trre14g00078 301 Pfam Lateral organ boundaries (LOB) domain 4 103 IPR004883 -
Trre14g00078 301 PIRSF AS2 1 297 IPR017414 -
Trre14g00078 301 MobiDBLite consensus disorder prediction 217 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g00078 Trre-Chr14 709202 710473 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g00078 1 281 AS2 family AT3G02550 60.071 1.64e-112 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre14g00078 LOB 1.6e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g00078 - - lja:Lj1g3v3317390.1 417.157