Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g00034 ATGGCATCAACAACATGTTTTGTTAACAAGAATGAATTTCCTACGAAATTAGTAGCTCCCATCTCTCGTTCGTATCCTGAACCTCTTGCAAAATATGACGATGTTGTGGCAAATCCCAAGCTCTTCATGCTTACGTTGGAGAAACTTCATGCTTCTATGGGTACCAAGTTCATGATTCCGATTATTGGAGGAAAAGAATTGGATTTGTGTCGACTCTTCATTGAAGTGACTTCTCGTGGAGGGATTGAGAAGCTTATGAAAGAGAGAAGATGGAAAGAAGTAACAGCAACTTTCAATTTTCCATCAACGGCGACAAATGCTTCCTTTGTGCTAAGAAAATATTATTCTTCATTACTTTGTCACTATGAACAAATATACTATTTCAGAGTCAATCGATGGACGCCTACACCTTCTGATGTTTTGCAGAATCAATCAACCATGTCAACTCCTGCTTCAATAGCACAATTTTTGCAGCCTTCTCCGGCAACACAACCAATTGACTTTCAAAAGTCAAGGGTTCATGCTTCTGAATTGCCTCAAGTGCCATTTTCAAGATCTTCAATTGTTGGAGTTATTGATGGAAAGTTTGAAAATGGATATTTAGTTTCAGTTTCACTGGGTTCAGAGACACTCAAAGGTGTACTATATGAGTCTCCACAATACATTATGATCAATAATAATAACATTGCATCTGCTACATTGGGGGTCCAACGCCGCCGTAGAAGGAAGAAGTCAGAAATAAAAAGGAGAGATCCTGCTCACCCAAAACCCAACAGAAGTGGTTACAATTTCTTCTTTGCTGAGCAACATGCAAAGCTAAAACTACTAAACCAAACCATGGACAAGGATATTAGTAGAATGATTGGTGAATTATGGAACAACTTAAATGAGTCTGAAAAAACAGTTTATCAAGAAAAAGCTGTTAAGGATAAAGAGAGGTACCAAGCAGAAATGGAAGATTATCGCGAAAAATTGAAGACGGACACTGCAATCGACAACGCTCTGCCGATGCAACAACAATTTCCAAAAGTAAATCCAGCATTGGTGGACGTTGACATAAAAATGCTTGACTCATTTCAAACTCCCGAGGAGAGTTTTTCTAGTGGAAGTGATTATGTTGCAGATGATATCAACATGGATGTTTCATCAGGTGGAGCAAAAGTTGATTCTGTAACTCTTATGCATTCAGAAAAATCAATTAAGGAAGGAGTTATTGAACTTCTTAGCCATTGTGAGGAGAAAAAAGAGGATGTTGGAGGATTTCAACAGACCCGAAAGATGAATGAGGGTCAAAATATGTTATCCTTACTTTAG 1314 0.3813 MASTTCFVNKNEFPTKLVAPISRSYPEPLAKYDDVVANPKLFMLTLEKLHASMGTKFMIPIIGGKELDLCRLFIEVTSRGGIEKLMKERRWKEVTATFNFPSTATNASFVLRKYYSSLLCHYEQIYYFRVNRWTPTPSDVLQNQSTMSTPASIAQFLQPSPATQPIDFQKSRVHASELPQVPFSRSSIVGVIDGKFENGYLVSVSLGSETLKGVLYESPQYIMINNNNIASATLGVQRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHAKLKLLNQTMDKDISRMIGELWNNLNESEKTVYQEKAVKDKERYQAEMEDYREKLKTDTAIDNALPMQQQFPKVNPALVDVDIKMLDSFQTPEESFSSGSDYVADDINMDVSSGGAKVDSVTLMHSEKSIKEGVIELLSHCEEKKEDVGGFQQTRKMNEGQNMLSLL 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g00034 437 FunFam High mobility group B protein 15 237 332 - -
Trre14g00034 437 SMART hmgende2 254 323 IPR009071 -
Trre14g00034 437 Pfam ARID/BRIGHT DNA binding domain 40 123 IPR001606 GO:0003677
Trre14g00034 437 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 255 322 IPR009071 -
Trre14g00034 437 MobiDBLite consensus disorder prediction 236 261 - -
Trre14g00034 437 SMART bright_3 37 128 IPR001606 GO:0003677
Trre14g00034 437 CDD HMG-box_AtHMGB9-like 255 321 - -
Trre14g00034 437 PRINTS High mobility group (HMG1/HMG2) protein signature 306 326 - -
Trre14g00034 437 PRINTS High mobility group (HMG1/HMG2) protein signature 287 306 - -
Trre14g00034 437 SUPERFAMILY HMG-box 243 326 IPR036910 -
Trre14g00034 437 ProSiteProfiles ARID domain profile. 36 127 IPR001606 GO:0003677
Trre14g00034 437 SUPERFAMILY ARID-like 35 129 IPR036431 GO:0003677
Trre14g00034 437 FunFam High mobility group B protein 15 30 144 - -
Trre14g00034 437 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 22 349 - -
Trre14g00034 437 Pfam HMG (high mobility group) box 255 322 IPR009071 -
Trre14g00034 437 Coils Coil 304 331 - -
Trre14g00034 437 CDD ARID_HMGB9-like 38 123 IPR045303 GO:0003677
Trre14g00034 437 Gene3D High mobility group box domain 239 338 IPR036910 -
Trre14g00034 437 Gene3D - 29 136 IPR036431 GO:0003677
Trre14g00034 437 SMART ARID_2 33 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g00034 Trre-Chr14 331771 335672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g00034 1 355 ARID Transcription Factor Family AT1G04880 53.743 5.24e-120 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Trre14g00034 ARID 4.7e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g00034 - - gmx:100783284 472.241