Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g00032 ATGGCCTCATCTTTGGAGGACCTTCTTCGAGAAGAAGGATTCAAAGGAAGCAGCAAAAAAGTGCATAGGTCAACATCTTCCTTCCACCATGGTGCTTCAAGTGATCCACTTCACTCTTTAGAAGAGAGACTTTGTGTATCATCAAGTGAAAGAATCAAAACACAGAAAACAAAGTCTAAAACAGCCTCAAGATATCAGATTAACAATACAAGAGACAATAAGACCACAAGGTCAAGGGATAATAATAATGTTTTTATAGGAAATGAGATAAATCACGGACTGTTGAAGAACGATGAATCTGAGAAGAACAAGTCTTATAATTCATCAGAGAGTGATAGTGGATTTGAAGATGTTTATTCAGATCAAGTATCTGATGCGAAAAGAGGCAAAGACAAGTATTTTAAGGAAAAATTGGTGGAAAAGCCAGTCAAGGATTCATATATGCTTAGACAATTGAGTGGAAATAGAAAGAATGTAAAACACCAAGAAAAATTGCAAACTATATCGAATAATAATAGCAAAAGTTTTGAAAATAGCAGGAACAAAAATAGCCATCAATTTCAAGCTGATCCTAGTCTGGCTATTGATGAAATTGCTGTGAAAGCACTAGTTTCCATTCTGAATGGATACATAGAAAATTTCCTAAAAGACGAAGATTTTCGATCTGCGATGCGCCACAATTGTTTCTCCTCCTTGAATTTTATTCAACTTGAGGAAGAAGAAAACAATTCTGAGACCAAAGTGATTACAAGTCTTGAGCAAGCAATTGAGTGCATAGAAAAAACTGCTGATGAGGAAGAACCTAAATCTGCAACAAATCTGAAAAGAGCAACAATTCAGCTTAGCATTATTGCAGGTTTGAGTTTGAATGATCTCAAGTATGATCTTACTTGCGGGATACCAAATTTCAAGTTATCAGCCTGTGCTCATCTTTACCTCAGTGTGGTATATATGATACAAATGAAAAAGAAAGTTTCAGCAAAGCATCTTTTGCAAGTCTTTCATGATTCACCTTTTCAGGCGCGGGCGTTATTGTTGCCTGAGCTTTGGGAGCGTTTGTTTTCTCCGCAATTTTTTCAATTGAAGAAATGGTATAATGACAAGGAAGGTGAAATTGTTGTAGATACACCAAGCAGAAAACCAAGAAAGTTAAAGATTCTTCAAAAATTGTATAATGAAAATTTGGATTCAGGAACTCAAACTTTTGCTTTATATTACAAAGATTGGCTCAGTGAAGGAGTAGAAACTCCAACTCTTCCTTCTATTGGAATTCCATCCTTATCTGTTAAGAGTCGACAGGGAAGTTCATTTGGTCATTCTTTTGAGTCTGCTAGCTCAAATGAACCATTCTCACCACAGGCAATGGTCAGCAAGAAGCTATATGATTCTTTCTTTGGTGGATATAGTAAACCTCAAGTCTATGTTGTTGATGAAGATAAGGATGAAGACAGTTATGAAAAATGTGAGAGAGGCTCTTATGGTTCAACTGTCGTTAAAAAAACAGTAATATACGAATCCGAAACTGTTAAATTTATTGATCAAAGTGATGAAGATTTCACTCCAAGTGTTCCAGTTCATGCATTCCATTCTCAGAAAGGAACATCAAGGACATCTGCAGAAGAATGGAAAGAGAAGAATTCCAGAAATGGTACTAGAAAATATTTCTCCATAGAAACTAATTTAAACAGTAACATAGTTGATGCTCTACCACAAGAAAAAGGAAATGAAATTTCTCTCAGAAAGGTGCAGCCAAATAAGATAAGCTCTACTCTTGAAGGATCATATTTTCCAACCATACCACAGGAATTTATTTGTCCACTGACAAGAAAGATCTTTGAGGAGCCAGTCACCTTAGAATCTGGTCAAACCTTTGAAAGAAAAGCCATCAAGGCATGGTTTCAAAAAGGAAACAGAACATGTCCAGTAACAGGAAATACTTTAGAATGTGTATTCATGCCATTTACCAACCTTATTTTGAAGCGTTTGATCGATAACTGGAAGTCAGAAGATTTTGATCGCCTTCTTGATTTCGCCTCTCAAGCGGTGGAAAATTCAGAGGTACTTAAGTTGAAAAAGCACGACGAGGCTATAGTTTTCAAGTTACAAAGTCTTTTCTCTTCCTTGAAAGAAGAGGAAAAATCAAGTTATGCAAAGCATATAATCTCTTTAGGAGTTTTTTCATTTATTTTCAGAAGATTTGAACTAGGAAATATGGAAGAAAAATCACTTGTTTTGGAGATCTTGTTAAATTGTATTCAAGCAGACTCTAGTTGCATATACAAGATAGCAAGAAGTGTCAACAAAAAATTTCTTCTTGAGCTTCTTCACAGCAAGGAGGTTACACCAACAACAAACACATTTCTCTTCCTTACTGAAATTTTGTCAATGAAGAGGAGAAAGGATGTTACTTCTTTCATAAGTGGCTTGGTGAGTGAAGATGTAGTTAGTACAATGGATATTGTGCTCATGTATCTCAAGAATTCTTCTCCAATTGAAAAGCCTCTCATTTCCGTTCTCTTATTACACTTTGATCTACCGGTTGAGCAGCCTAAAAAGCATAGCATATACATAGAGAATGCCGTGAATGCCATTGCAGAGGCGCTTGATGCCAGCTTAAATGACGAGAATGTCCAAAAGAAGTGTTGCAGAGCTCTATTAATCTTGTGTGGCCATTTTTCTTCCACTGGAAAGATACCAGCCAAGACTACCATCTTAAAGCAAGCAGGTTATAATAATGGTAGCATAGAATTGAAATCTCCTAGCCATGATGAAGAGGATCAACGCTTAGATATAACCATTTCATCGGAAGATGATGAAGAAGAAAGGCATGAAGAGTTCATGATGAACTTGTTAGAAACATTGATTGGAGATGGAGAAAGTCCATTTTTGAAGAGCATATCTAGATGTTTAGATTCTACACATGTAGATTTGGTGAGGGCTAGTCTAATAACTGTTACATGGTTGAGTTCCTCATTATCTAAACAATATAATGCTGGATTGCATCTTCCTGCATTCCTAGCTATCATCTCTCAGCTGAAAGGAATCCTGCAAAATGGAGAACTTGAGCTCAAGACTCTTGCATCTATGTCCTTGTTTAACTTCAGTAAAATATCAGAATGCAGAACACTTTTGAAGATTATGGCAGAAGATATTGCTCCCCTTCTTCATGGACTAGTTGATGTAATATGGACTGCTAAGAAACTCCATGCCATTTTGTGTAGGGAGAATATTTAG 3234 0.3627 MASSLEDLLREEGFKGSSKKVHRSTSSFHHGASSDPLHSLEERLCVSSSERIKTQKTKSKTASRYQINNTRDNKTTRSRDNNNVFIGNEINHGLLKNDESEKNKSYNSSESDSGFEDVYSDQVSDAKRGKDKYFKEKLVEKPVKDSYMLRQLSGNRKNVKHQEKLQTISNNNSKSFENSRNKNSHQFQADPSLAIDEIAVKALVSILNGYIENFLKDEDFRSAMRHNCFSSLNFIQLEEEENNSETKVITSLEQAIECIEKTADEEEPKSATNLKRATIQLSIIAGLSLNDLKYDLTCGIPNFKLSACAHLYLSVVYMIQMKKKVSAKHLLQVFHDSPFQARALLLPELWERLFSPQFFQLKKWYNDKEGEIVVDTPSRKPRKLKILQKLYNENLDSGTQTFALYYKDWLSEGVETPTLPSIGIPSLSVKSRQGSSFGHSFESASSNEPFSPQAMVSKKLYDSFFGGYSKPQVYVVDEDKDEDSYEKCERGSYGSTVVKKTVIYESETVKFIDQSDEDFTPSVPVHAFHSQKGTSRTSAEEWKEKNSRNGTRKYFSIETNLNSNIVDALPQEKGNEISLRKVQPNKISSTLEGSYFPTIPQEFICPLTRKIFEEPVTLESGQTFERKAIKAWFQKGNRTCPVTGNTLECVFMPFTNLILKRLIDNWKSEDFDRLLDFASQAVENSEVLKLKKHDEAIVFKLQSLFSSLKEEEKSSYAKHIISLGVFSFIFRRFELGNMEEKSLVLEILLNCIQADSSCIYKIARSVNKKFLLELLHSKEVTPTTNTFLFLTEILSMKRRKDVTSFISGLVSEDVVSTMDIVLMYLKNSSPIEKPLISVLLLHFDLPVEQPKKHSIYIENAVNAIAEALDASLNDENVQKKCCRALLILCGHFSSTGKIPAKTTILKQAGYNNGSIELKSPSHDEEDQRLDITISSEDDEEERHEEFMMNLLETLIGDGESPFLKSISRCLDSTHVDLVRASLITVTWLSSSLSKQYNAGLHLPAFLAIISQLKGILQNGELELKTLASMSLFNFSKISECRTLLKIMAEDIAPLLHGLVDVIWTAKKLHAILCRENI 1077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g00032 1077 Pfam U-box domain 599 669 IPR003613 GO:0004842|GO:0016567
Trre14g00032 1077 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 598 671 IPR013083 -
Trre14g00032 1077 ProSiteProfiles U-box domain profile. 598 673 IPR003613 GO:0004842|GO:0016567
Trre14g00032 1077 SUPERFAMILY RING/U-box 593 669 - -
Trre14g00032 1077 Coils Coil 235 255 - -
Trre14g00032 1077 SMART Ubox_2 602 666 IPR003613 GO:0004842|GO:0016567
Trre14g00032 1077 MobiDBLite consensus disorder prediction 523 545 - -
Trre14g00032 1077 PANTHER OS04G0584500 PROTEIN 581 1075 - -
Trre14g00032 1077 MobiDBLite consensus disorder prediction 1 122 - -
Trre14g00032 1077 CDD RING-Ubox_PUB 600 648 IPR045210 -
Trre14g00032 1077 MobiDBLite consensus disorder prediction 164 185 - -
Trre14g00032 1077 SUPERFAMILY ARM repeat 709 1059 IPR016024 -
Trre14g00032 1077 Gene3D - 687 1071 IPR011989 -
Trre14g00032 1077 MobiDBLite consensus disorder prediction 153 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g00032 Trre-Chr14 299859 304818 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g00032 595 676 U-box Gene Family AT5G09800 40.964 9.52e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g00032 - - ccaj:109801846 1300.03