Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g00025 ATGGATATTAATATTGGCAAGAGCAAGAGCTGCATGAAGAAGAAGTCATCAGGCCTCATCACAAAAACATGGGAGAGATGCAAGTCCATAGGAAGAGGCGGAGGAGGGCACAAAACTAGTAAATATTATCCATCATCACCCATGATGATGACGACTCCAAGGAGCAAATCATGGCCTAGTAGTCTACGAGGAGGAAAGAAAGGCGGTGTTGTGGCTCCGGAAGGATGCTTTTCGGTTTATGTTGGGCCTCAAATGCAAAGGTTTGTGATCAAAACTGAGTATGCCAACCATCCTTTGTTCAAGATGTTGCTTGAAGAAGCTGAATCAGAATATGGTTATAGCTGCCAACGACCTTTGGCCCTTCCTTGTAATGTTGATGTCTTTTATAAGGTTTTGATGGAAATGCATAGTGAGGCTCCTCCTCCTCCTCCTCCTCCTCATGGTTGTGCTTTCAGAAACCGTTCTCGTTCTTCTTATCATCTATCAGTCCTTCCAGAATGA 501 0.4411 MDINIGKSKSCMKKKSSGLITKTWERCKSIGRGGGGHKTSKYYPSSPMMMTTPRSKSWPSSLRGGKKGGVVAPEGCFSVYVGPQMQRFVIKTEYANHPLFKMLLEEAESEYGYSCQRPLALPCNVDVFYKVLMEMHSEAPPPPPPPHGCAFRNRSRSSYHLSVLPE 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g00025 166 Pfam Auxin responsive protein 65 132 IPR003676 GO:0009733
Trre14g00025 166 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 54 132 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g00025 Trre-Chr14 245969 246469 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g00025 72 137 Calmodulin-binding Proteins AT5G20810 45.455 5.14e-16 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g00025 K14488 - gmx:100777217 176.792