Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g00021 ATGTCAGGAATATCATACTCTGCTTTTATCACCCCTAGGTTGGTTCTCAACAAGTTTCTTGCTAAATCTCAACGTGAAGGGGTTGGAGCTGTTGTTAGAAGAGGCATTGGAAGGAGCGAGTTGAGAAACTTGGATCCTTTTCTAATGTTGGATCACTTCTCAGTGTCTCCTCCTGGAGGATTTCCTGATCATCCACACAGAGGCTTTGAAACGGTCACATACATGCTAGAGGGAGGTATGACTCACCAAGATTTTGCTGGCCACAAGGGTACAATAAGAGCTGGTGATGTTCAGTGGATGACTGCAGGCAGGGGAATAATTCACTCTGAAATGCCTGCAGAAGCAAACAACAATGGATTGCAATTATGGATCAATTTAAAATCCAATGACAAAATGATTGAGCCAAATTATCAAGAACTTCCAAGTGAGAACATACCATCAGGAGAAAAAGATGGAGTTGAAGTGAGAGTGATAGCAGGAGAATCAATGGGAGTGAATTCACCAGTCTACACAAGAACACCAACTATGTTCCTTGATTTCACCATGAGTCCAGGAACTCAGCTGCATCAAAATATTCAAGAATCATGGAATTCATTTGCATACATAATGGAAGGTGAAGGTGTTTTTGGTTCACCAAATTCATCACCAATTATGGCTCACCATGTCATTGTTTTCACTCAAGGTGATGGACTTAGTGTTTGGAATAACTCTTCAAAACCTTTGAGATTTGTTTTGATTGGTGGACAACCATTGAATGAACCTGTGGCTCAGTATGGGCCATTTGTCATGAATACACAATCTGAGATTGAGAAGACTCTTGAAGACTATCAAAATGGTAGGAATGGGTTTGAGATGAGGCTAAATTGGAGATCTCAATAG 879 0.4073 MSGISYSAFITPRLVLNKFLAKSQREGVGAVVRRGIGRSELRNLDPFLMLDHFSVSPPGGFPDHPHRGFETVTYMLEGGMTHQDFAGHKGTIRAGDVQWMTAGRGIIHSEMPAEANNNGLQLWINLKSNDKMIEPNYQELPSENIPSGEKDGVEVRVIAGESMGVNSPVYTRTPTMFLDFTMSPGTQLHQNIQESWNSFAYIMEGEGVFGSPNSSPIMAHHVIVFTQGDGLSVWNNSSKPLRFVLIGGQPLNEPVAQYGPFVMNTQSEIEKTLEDYQNGRNGFEMRLNWRSQ 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g00021 292 CDD cupin_pirin_N 30 126 - -
Trre14g00021 292 PANTHER PIRIN-RELATED 8 291 IPR012093 -
Trre14g00021 292 Gene3D Jelly Rolls 26 278 IPR014710 -
Trre14g00021 292 Pfam Pirin 33 124 IPR003829 -
Trre14g00021 292 CDD cupin_pirin_C 174 250 - -
Trre14g00021 292 Gene3D Jelly Rolls 146 251 IPR014710 -
Trre14g00021 292 SUPERFAMILY RmlC-like cupins 13 290 IPR011051 -
Trre14g00021 292 PIRSF Pirin 11 290 IPR012093 -
Trre14g00021 292 FunFam pirin 26 157 - -
Trre14g00021 292 Pfam Pirin C-terminal cupin domain 177 282 IPR008778 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g00021 Trre-Chr14 208822 210674 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g00021 4 285 Calmodulin-binding Proteins AT3G59220 65.141 1.82e-137 388
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g00021 K06911 - gmx:100775597 497.664