Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g00011 ATGATGAATTTTGTTAAGAAGAATGGTGAAGTGAGACTGCCTCCAGGGTTCCGTTTCCACCCAACAGATGAAGAACTTGTTGTTCAGTATTTGAAGCGTAAGGTCTTCTCTTTACCCTTACCCGCTTCCATCATTCCTCAGGTTGATCTTTGCAAGTCTGATCCATGGGATTTACCAGGTGATTTGGAACAAGAGAGATACTTTTTCAGCACTAAAGAAGCCAAATACCCAAATGGTAACAGATCCAACAGAGCTACTAACTCTGGTTACTGGAAAGCAACTGGTTTGGATAAACAAATCTCCAAATCTTCTGCTACTCAACTTGTTGTTGGGATGAAGAAGACTCTTGTTTTCTACACAGGCAAACCACCTCATGGTTCAAGAACTGATTGGATCATGCACGAATATCGCCTCACTCCCTCTCACTCTAATCCCATCAATCAAAATTGGGTTCTTTGTCGCATATTTCTCAAGAGAAGAGCTGGTTCTACTTGTAAAAATGGAGGAGGAGATGATGACGAGAACAGTATTGTCACAGTTGCAGACACAAGTCGTCTGTTGAGACTCAAACCCAAAGCCAAGCAGCAGCAGCAGGTCAACAACTCAAGTTCAAAGGTGGTGGTTTTCTATGACTTTTTGAACACCGATGCCTCCTCCTCCTCCTCCTCCTCCTCAATCTCACCAACTACAAGTGGAATCACTGATGAATTGGGTCAACATGAAAATGAAGACAGCAGTACCTCATTCACAATCATCCCAAATACTAAACCTTAA 774 0.4251 MMNFVKKNGEVRLPPGFRFHPTDEELVVQYLKRKVFSLPLPASIIPQVDLCKSDPWDLPGDLEQERYFFSTKEAKYPNGNRSNRATNSGYWKATGLDKQISKSSATQLVVGMKKTLVFYTGKPPHGSRTDWIMHEYRLTPSHSNPINQNWVLCRIFLKRRAGSTCKNGGGDDDENSIVTVADTSRLLRLKPKAKQQQQVNNSSSKVVVFYDFLNTDASSSSSSSSISPTTSGITDELGQHENEDSSTSFTIIPNTKP 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g00011 257 Pfam No apical meristem (NAM) protein 14 138 IPR003441 GO:0003677|GO:0006355
Trre14g00011 257 SUPERFAMILY NAC domain 9 158 IPR036093 GO:0003677|GO:0006355
Trre14g00011 257 Gene3D NAC domain 22 162 IPR036093 GO:0003677|GO:0006355
Trre14g00011 257 MobiDBLite consensus disorder prediction 216 257 - -
Trre14g00011 257 MobiDBLite consensus disorder prediction 216 236 - -
Trre14g00011 257 ProSiteProfiles NAC domain profile. 13 158 IPR003441 GO:0003677|GO:0006355
Trre14g00011 257 MobiDBLite consensus disorder prediction 243 257 - -
Trre14g00011 257 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 12 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g00011 Trre-Chr14 114366 115334 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g00011 7 247 NAC Transcription Factor Family AT5G13180 56.126 7.12e-90 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre14g00011 NAM 5.3e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g00011 - - aip:107635778 295.434