Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05460 ATGTCGACGCAGTTGGCCATGATTCTTATAGACAAGGAAAGCAGTATCTTATCTGCAATCAAGAAACAAAGACAAAATGGCATCAAAGAGGACACATTAAACTTTCCAAAGATTTTTCTCCTGGCCACCCATCTTAGTCCTAGTGAACGCAACGAGCTGAAGTGGGTTGGTATCATAGGTGATATACTAATGAAGCCTCTTTGGCTAAGTGTTTTGATTAACTACTACAGAAAGAAATTATCAGAACTTGGAAATTTATTAATAGACAAACGAATTTTGGTGGTTGATGATAATGCGGTGAACAGAAAAGTTGCAGAAGGTGTTCTGCAGAAATATGGGGTAGTAGTTACATGTGTTGAGGGCGGTAAGACTGCTCTAAAGATGCTTAAACCACCACATAATTTTGATGCTTGTTTCATGGATCTCCAAATTCCGGAAATGGATGGTTTTGAGGTGACGAGGAAAATTCGCCATATGGAGAATTTAGTAAATGAAAAAATTGTATGTGGGGAAGCATCGGCAAAGATGTTTGGTAACATTTCTTATTGGTACACTCCAATTCTGGCTATGACAGCTGATGCAACTCAAGCATCAGTTGAAGAATGCAAAAAATGTGGGATGGATGATTGCATGTCGAAGCCATTTGAAGAAGAGCAACTCTATATGGCAGTCGCACGTGTCTTCAATTTTGGTTCATAG 699 0.3906 MSTQLAMILIDKESSILSAIKKQRQNGIKEDTLNFPKIFLLATHLSPSERNELKWVGIIGDILMKPLWLSVLINYYRKKLSELGNLLIDKRILVVDDNAVNRKVAEGVLQKYGVVVTCVEGGKTALKMLKPPHNFDACFMDLQIPEMDGFEVTRKIRHMENLVNEKIVCGEASAKMFGNISYWYTPILAMTADATQASVEECKKCGMDDCMSKPFEEEQLYMAVARVFNFGS 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05460 232 Gene3D - 86 230 - -
Trre13g05460 232 ProSiteProfiles Response regulatory domain profile. 91 228 IPR001789 GO:0000160
Trre13g05460 232 CDD REC_hyHK_CKI1_RcsC-like 92 224 - -
Trre13g05460 232 SMART REC_2 90 224 IPR001789 GO:0000160
Trre13g05460 232 PANTHER TWO-COMPONENT HISTIDINE KINASE 7 221 - -
Trre13g05460 232 Pfam Response regulator receiver domain 92 224 IPR001789 GO:0000160
Trre13g05460 232 SUPERFAMILY CheY-like 89 229 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05460 Trre-Chr13 59051233 59052206 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05460 5 228 Miscellaneous Gene Families AT5G35750 55.785 2.85e-80 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre13g05460 Response_reg 5.4e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05460 K14489 - gmx:100805107 332.413