Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05451 ATGAGTAACGCAACTGATAATAGTAATCTTCTGGGTGAATCCCCAGCCGTTGATATAACCGGCAAGATCATGGTGGTCATCATAATAGTTCTCTTCATGGTTGTTGTTTCTTTTCTTTTCATTCATCTTTTTGCCAAGGGATTCTGGTGGAGCCAGAGGCGGCAGAGCCAGAGCGACAACAACCGCCAACGAGGAGGACGGAGGAGTCATCATCATGGTCTAGATGCTTCTGTAATCAAGTCCCTACCCGTATCAGTATTCAATTCCAAAGATGAAAATGTGGAATGTTCGGTTTGCCTGTCGGAAGTAGTTGAAGGTGAAAAGTTGAGGGTTTTGCCTCAATGCAATCACAAGTTTCATATAGACTGCATTGATATGTGGTTCCAATCCCATTCAACCTGCCCCCTTTGCAGAATCACGCTTGCAACTCCTTCTTCTTCTACCTTAGTAGTACAACAAGTAGAACAAGAACAAGAATCACCCGCTCCTGCTTTTCCCACAAATGTCCTTATTTGGGGAGGAAACCACAACCAAGTAATCTCTTCTACTACTTTGGAACACAACATTTCTTCTTCCTCTTCCAATATTCATAACAACAGCAACAACAACACACGTGATGTTGATGGAAATGGAATGTTAAGGATTGATATACCCAGTGATTGTGACTGCGATGCTACTGCTTCATCATCCTCGCCCTTGGGAACTGGAGGAGGAGGAGGGAGATTGAGTTCATTGAAGAGACTTTTAAGCAGCAGAGCCTTAAGCAGCCTAAATCCATGGAGTCCCACTTCTTCTTCTTCTTCTACTACACATGTCCAACAACAAACAAAACCAAAAGAAGCATCAGGACAGACCTAG 858 0.4347 MSNATDNSNLLGESPAVDITGKIMVVIIIVLFMVVVSFLFIHLFAKGFWWSQRRQSQSDNNRQRGGRRSHHHGLDASVIKSLPVSVFNSKDENVECSVCLSEVVEGEKLRVLPQCNHKFHIDCIDMWFQSHSTCPLCRITLATPSSSTLVVQQVEQEQESPAPAFPTNVLIWGGNHNQVISSTTLEHNISSSSSNIHNNSNNNTRDVDGNGMLRIDIPSDCDCDATASSSSPLGTGGGGGRLSSLKRLLSSRALSSLNPWSPTSSSSSTTHVQQQTKPKEASGQT 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05451 285 SMART ring_2 96 137 IPR001841 -
Trre13g05451 285 Pfam Ring finger domain 95 138 IPR001841 -
Trre13g05451 285 MobiDBLite consensus disorder prediction 189 213 - -
Trre13g05451 285 FunFam E3 ubiquitin-protein ligase ATL6 62 144 - -
Trre13g05451 285 SUPERFAMILY RING/U-box 86 144 - -
Trre13g05451 285 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 19 215 - -
Trre13g05451 285 CDD RING-H2_EL5-like 95 138 - -
Trre13g05451 285 MobiDBLite consensus disorder prediction 189 208 - -
Trre13g05451 285 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 144 IPR013083 -
Trre13g05451 285 ProSiteProfiles Zinc finger RING-type profile. 96 138 IPR001841 -
Trre13g05451 285 MobiDBLite consensus disorder prediction 255 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05451 Trre-Chr13 58974656 58975513 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05451 7 250 C3H Transcription Factor Family AT1G53820 32.459 1.89e-35 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05451 - - mtr:25499753 245.358