Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05448 ATGGTGGATGTTGGTGGAAGGTTGTTGATGCTTATGCTGTTCTTCAGCTGCATTCTTGCTGCCACTGCCACTACAGATCCAACTGATGTTACTTCTGTAAAGGCTATATTTCAAAGCGTGAATTCACCTCCCCAACTAGGTTGGCCTGCTAATGGCGATGATGATCCGTGTGGCCAGTCTTGGAAAGGCATTACTTGTTCAGCCAACCGTGTTACACAGATTCAGTTATCCAATCTTGGTCTAACTGGAACATTGGCTTACGGATTACAAAACTTAACATCTCTCACCACTCTAGACATGAGTAACAACAATCTTGTGGGAACTATACCATACCAACTTCCTCCAAATGTGCAGCGCCTAAATTTTGCTCATAATAACTTGACTGGGACAGTCCCTTACTCTATTTCTAACCTGACCTCTCTTACAGACCTGAATCTCAATCACAATCAGCTCCAGCAAGCACTGAATGTCAACTTTCAAAATCTTTCTACCCTCTCCAAATTAGACCTGTCTTTCAACTCTTTGATAGGTGACCTCCCTCAGACTATGAGCTCACTTTCAGGCATAACCACCATGTATCTTCAAAACAATCAGTTTACAGGCACTATTGATATTCTTGCTAATCTGCCTCTGAATAGTCTGAATGTAGAAAACAATAATTTCACAGGATGGATACCAGAGCGGTTGAAAAACATAGACCTTCAGATGGGTGGTAATATGTGGAGCTCAGGACCTGCACCACCACCTCCTCCTGGGACGCCTCCAGTACTTAAAAGCAACCAACACCACAAATCTGGTGGTGGAAGAAGTACCACTAGCCAGCATCCCAGCAGCGACACAATCAATGAGGGCAAAAAATCTGGAATTGGAGGTGGTGGAATATCTGGAATTGTGATCTCCATCATTGTTGCTGGGGCAATAGTAGCATTCTTTCTGCTGAAGAGAAAATCCAAGAAGTCATCTTCCGATTTAGAAAAATTGGGCAATCAGTCTACTGCTCCTCTTCCTTCAAATGAAGTGCATGAAATTACATCTGTGCAGACTTCTTCCATGCTTGACTTGAAGAAGTTGGATACTTCTGACTCAATAAATCTGAAGCCCCCACCTATTGATCGTCATAAGTCATTTGAGAAAAACGAATTCTCAAACAAGTCCACTATAGTCAAGAAGATTGTAACAGCTCCTGTAGATGTCCAATCATATTCTATAGCCGATCTTCAGATTACTACTGGCAGCTTCAATGTGGATCATCTTGTTGAAGAGGGGTCTTTTGGGCGTGTGTACCGTGCTCAATTTCATGATGGAAAGGTTCTTGCAGTGAAGAAAATAGATTCATCTGTCCTTCCCAATGATTTTTCAGAAGATTTTATAGAAATAGTGTCAAACATCTCCTATTTACATCATCCAAACGTAACAGAGCTTGTAGGTTATTGCTCAGAGCATGGACAACATCTCTTAGTTTATGAGTTTCATAAAAATGGATCACTGCATGACTTCCTTCACGTGTCAGATGAATACAGTAAACCATTGATATGGAATTCCCGTGTTAAGATTGCTTTGGGGACTGCACGAGCTTTAGAGTACCTGCATGAAGTTTGTTCTCCTTCAGTTGTGCATAAGAATATTAAGTCAGCCAATATATTACTTGACTCAGAGCTTAATCCTCATCTTTCAGACTGTGGATTGGCAAGCTATATTCCAAATGCAGAGCAGATACTAAACCATAATGTTGGATCTGGATATGATGCACCTGAAGTTGCGTTGTCTGGTCAGTATACCTTTAAAAGTGATGTCTACAGCTTTGGGGTTGTCATGTTGGAGATTCTCAGTGGACGGAAACCTTTTGATAGCTCAAGGGCAAGACCGGAGCAGTATTTGGTTCGATGGGCAACACCCCAGCTTCATGACATTGATGCATTAGCTAAGATGGTTGATCCTACGTTGAAAGGGCTATATCCTGTTAAATCTCTATCACGTTTTGCTGATGTTATTGCACTTTGCGTTCAGCCGGAGCCTGAATTTAGACCACCAATGTCAGAGGTGGTTCAAGCGCTAGTACGATTAGTGCAGCGAGCTAACATGAGCAGGCGGACGTTCACATTTGGTAGTGATCATGGAGGATCCTTACGAGGAAGTGATGAGCCAGCTATACGAGACATCTAA 2163 0.4226 MVDVGGRLLMLMLFFSCILAATATTDPTDVTSVKAIFQSVNSPPQLGWPANGDDDPCGQSWKGITCSANRVTQIQLSNLGLTGTLAYGLQNLTSLTTLDMSNNNLVGTIPYQLPPNVQRLNFAHNNLTGTVPYSISNLTSLTDLNLNHNQLQQALNVNFQNLSTLSKLDLSFNSLIGDLPQTMSSLSGITTMYLQNNQFTGTIDILANLPLNSLNVENNNFTGWIPERLKNIDLQMGGNMWSSGPAPPPPPGTPPVLKSNQHHKSGGGRSTTSQHPSSDTINEGKKSGIGGGGISGIVISIIVAGAIVAFFLLKRKSKKSSSDLEKLGNQSTAPLPSNEVHEITSVQTSSMLDLKKLDTSDSINLKPPPIDRHKSFEKNEFSNKSTIVKKIVTAPVDVQSYSIADLQITTGSFNVDHLVEEGSFGRVYRAQFHDGKVLAVKKIDSSVLPNDFSEDFIEIVSNISYLHHPNVTELVGYCSEHGQHLLVYEFHKNGSLHDFLHVSDEYSKPLIWNSRVKIALGTARALEYLHEVCSPSVVHKNIKSANILLDSELNPHLSDCGLASYIPNAEQILNHNVGSGYDAPEVALSGQYTFKSDVYSFGVVMLEILSGRKPFDSSRARPEQYLVRWATPQLHDIDALAKMVDPTLKGLYPVKSLSRFADVIALCVQPEPEFRPPMSEVVQALVRLVQRANMSRRTFTFGSDHGGSLRGSDEPAIRDI 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05448 720 MobiDBLite consensus disorder prediction 258 284 - -
Trre13g05448 720 Gene3D Transferase(Phosphotransferase) domain 1 492 703 - -
Trre13g05448 720 PRINTS Leucine-rich repeat signature 95 108 - -
Trre13g05448 720 PRINTS Leucine-rich repeat signature 162 175 - -
Trre13g05448 720 Gene3D Ribonuclease Inhibitor 27 265 IPR032675 -
Trre13g05448 720 MobiDBLite consensus disorder prediction 700 720 - -
Trre13g05448 720 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 377 490 - -
Trre13g05448 720 MobiDBLite consensus disorder prediction 324 340 - -
Trre13g05448 720 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 26 252 - -
Trre13g05448 720 Pfam Leucine rich repeat 94 151 IPR001611 GO:0005515
Trre13g05448 720 MobiDBLite consensus disorder prediction 321 340 - -
Trre13g05448 720 MobiDBLite consensus disorder prediction 236 287 - -
Trre13g05448 720 SUPERFAMILY L domain-like 31 232 - -
Trre13g05448 720 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 71 686 - -
Trre13g05448 720 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 491 699 - -
Trre13g05448 720 SUPERFAMILY Protein kinase-like (PK-like) 396 685 IPR011009 -
Trre13g05448 720 ProSiteProfiles Protein kinase domain profile. 413 688 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g05448 720 Gene3D Phosphorylase Kinase; domain 1 373 490 - -
Trre13g05448 720 CDD STKc_IRAK 421 688 - -
Trre13g05448 720 Pfam Protein tyrosine and serine/threonine kinase 416 685 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05448 Trre-Chr13 58959484 58965435 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05448 10 698 Strubbelig Receptor Gene Family AT1G53730 63.286 0.0 808
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Trre13g05448 PK_Tyr_Ser-Thr 7.3e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05448 - - psat:127132034 1167.14