Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05445 ATGGCGGAGGAACTGGATAAACCTTTACTTGATCCCGAGAATTTCAACCGTGAGGGCATTGATTTGGAGCGCATACCACTAGAGCAAGTATTTGAACAGTTGAAAACATCACCGAGAGGACTTTCGTCCGATGATGCTGAAGCCCGACTTCACATATTTGGCCCAAACAAACTTGAAGAGAGGAAAGAGAATAAAATATTGAAATTTCTTAGTTTTATGTGGAATCCTCTTTCATGGGTTATGGAAGCAGCAGCACTGATGGCAATTGTCCTTGCCAATGGCGGAGGGGAGGGTCCTGATTGGCAAGACTTTGTAGGGATTATATGCTTGCTGGTAATAAACTCAACAATTAGTTTTATAGAAGAAAATAATGCTGGCACTGCTGCAGCAGCATTAATGGCTCGCTTAGCTCCAAGAACAAAGGTTCTAAGAGATGGTCAGTGGCAAGAAGATGATGCAGCTATTTTAGTACCTGGTGATATAATCAGCATAAAGCTGGGAGATATCATTCCAGCTGATGCTCGTTTGCTCGAAGGAGACCCTCTCAAAATTGACCAGGCAACCCTTACTGGAGAGTCCCTACCTGTCACAAAAAAAACTGGTGATGAGGTCTTTTCAGGTTCCACATGTAAACACGGAGAGATTGAAGCCGTAGTGATAGCAACAGGGGTTCATTCCTTTTTTGGAAAAGCAGCACACTTGGTTGACAGTACCGTAGTTGTCGGACACTTTCAGAAGGTTCTTACCTCAATTGGTAACTTCTGCATTTTCTCTATAGCTATAGGGATGATTCTTGAAATAATTGTAATGTTCCCTGTGGAGCACCGATCATACAGGGATGGAATCAACAACCTTCTTGTTCTCCTGATTGGAGGAATTCCCATTGCTATGCCAACAGTATTATCTGTAACACTTGCCATTGGATCCCATCGCCTTTCTCAGCAGGGAGCTATTACAAAAAGAATGACAGCGATTGAAGAAATGGCAGGCATGGATGTCCTATGCAGTGACAAAACGGGTACTCTTACGCTAAATCGCCTGAGTGTTGATCAAAATCTTATAGAGGTCTTTAACAACAATATGGACAAAGATATGATTGTTCTACTAGCAGCTAGAGCAGCTAGATTGGAAAATCAGGATGCCATTGATGCTGCCATTGTTAATATGCTAGCTGATCCAAAGGAGGCTCGTGCAAACATCACTGAAGTTCATTTTCTACCATTCAATCCCGTAGACAAACGTACAGCATTAACATACATTGATTCTAATGGAAATTTTTACAGGGCCAGCAAAGGAGCTCCAGAACAGATTCTAAATATGTGCAAAGAGAAAGACATGATTGCCGGAAAAGTGCATGCAGTCATAGACAAATTTGCTGAAAGGGGATTGCGATCTCTTGCAGTTGCTTTTCAGGAAATTCCTGAAAAATCGAAGGATAGCCCTGGAAGTCCATGGACTTTTTGTGGTTTATTGCCTTTGTTTGATCCCCCGAGACATGATAGTGCTGAGACAATCCAAAGAGCACTTAACCTTGGAGTTTGTGTTAAGATGATTACAGGGGATCAGTTGGCTATTGCAAAGGAGACGGGCAGAAGACTAGGCATGGGTACAAATATGTACCCTTCTTCATCTTTGTTGGGTCGCAACAAAGATGAGAATGAAGCTCTCCCAGTAGACGAACTCATTGAAAAGGCAGATGGATTTGCTGGTGTATTTCCTGAACACAAATATGAAATAGTCAAGATTTTACAAGAAAAGCAACATGTTGTTGGAATGACTGGAGATGGAGTAAATGATGCCCCAGCATTGAAGAAAGCAGATATTGGAATAGCTGTGTCAGATGCTACAGATGCTGCAAGAAGTGCTGCTGATATAGTCTTAACTGAGCCTGGCTTAAGTGTTATTATTAGCGCTGTGTTAACTAGCCGAGCTATATTTCAAAGGATGAAAAATTATACAATATATGCAGTCTCCATCACCATAAGGATAGTGCTTGGTTTTGTGCTCCTAGCATTAATATGGGAGTATGATTTTCCACCCTTCATGGTCCTGATCATTGCAATCCTAAATGACGGTACTATCATGACCATAGCTAAAGACAGAGTAAAGCCATCCCCAACACCTGACAGTTGGAAACTGCCTGAGATATTTGCAACAGGAGTAGTGATTGGCACTTACCTTGCTTTGGTTACTGTCCTGTTCTACTGGGCAGTAGTTGAGACCACTTTCTTTGAGACCCACTTCCACGTAACCTCCCTATCCGGGGAGAGTGAGAAAGTTTCATCGGCTGTATATCTGCAAGTTAGCATCATTAGCCAGGCTCTAATTTTTGTTACTCGTAGCCGTGGTTGGTCATTTCTAGAGAGACCTGGAACTTTATTGATTTGCGCCTTTGTAATAGCTCAACTGGTGGCAACCTTAATTGCAGTCTATGCAAATATCAGTTTTGCTGAAATTCGAGGAATTGGATGGGAATGGGCAGGTGTTATATGGTTATTTAGTTTAATATTCTATGTACCCTTGGACATCATTAAGTTCACAGTGCGCTATGCCTTGAGTGGAGAAGCTTGGAATCTCCTATTTGACAGAAAGACTGCTTTTACATCTAAGAAAGACTATGGGACGGAAGATAGGGCAGCAAAGTGGGTTCTTTCACAGGGAAGTCTGCAAGGACTGAATCAGATGACCTCAGGCTTGGAGGTCAGTGGAAGGCGGTCTTCTCTAATAGCCGAGCAGGCCAGAAGACGTGCTGAAATAGCCAGGCTGGGGGAGTTGCACACACTCAGAGGACATGTAGAGTCTGTTTTGAGACTCAAAAATTTAGACCTGAAGGCGATCCAATCAGCTCACACAGTCTGA 2859 0.4267 MAEELDKPLLDPENFNREGIDLERIPLEQVFEQLKTSPRGLSSDDAEARLHIFGPNKLEERKENKILKFLSFMWNPLSWVMEAAALMAIVLANGGGEGPDWQDFVGIICLLVINSTISFIEENNAGTAAAALMARLAPRTKVLRDGQWQEDDAAILVPGDIISIKLGDIIPADARLLEGDPLKIDQATLTGESLPVTKKTGDEVFSGSTCKHGEIEAVVIATGVHSFFGKAAHLVDSTVVVGHFQKVLTSIGNFCIFSIAIGMILEIIVMFPVEHRSYRDGINNLLVLLIGGIPIAMPTVLSVTLAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNRLSVDQNLIEVFNNNMDKDMIVLLAARAARLENQDAIDAAIVNMLADPKEARANITEVHFLPFNPVDKRTALTYIDSNGNFYRASKGAPEQILNMCKEKDMIAGKVHAVIDKFAERGLRSLAVAFQEIPEKSKDSPGSPWTFCGLLPLFDPPRHDSAETIQRALNLGVCVKMITGDQLAIAKETGRRLGMGTNMYPSSSLLGRNKDENEALPVDELIEKADGFAGVFPEHKYEIVKILQEKQHVVGMTGDGVNDAPALKKADIGIAVSDATDAARSAADIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFVLLALIWEYDFPPFMVLIIAILNDGTIMTIAKDRVKPSPTPDSWKLPEIFATGVVIGTYLALVTVLFYWAVVETTFFETHFHVTSLSGESEKVSSAVYLQVSIISQALIFVTRSRGWSFLERPGTLLICAFVIAQLVATLIAVYANISFAEIRGIGWEWAGVIWLFSLIFYVPLDIIKFTVRYALSGEAWNLLFDRKTAFTSKKDYGTEDRAAKWVLSQGSLQGLNQMTSGLEVSGRRSSLIAEQARRRAEIARLGELHTLRGHVESVLRLKNLDLKAIQSAHTV 952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05445 952 PRINTS P-type cation-transporting ATPase superfamily signature 185 199 - -
Trre13g05445 952 PRINTS P-type cation-transporting ATPase superfamily signature 616 628 - -
Trre13g05445 952 PRINTS P-type cation-transporting ATPase superfamily signature 593 612 - -
Trre13g05445 952 PRINTS P-type cation-transporting ATPase superfamily signature 489 500 - -
Trre13g05445 952 PRINTS P-type cation-transporting ATPase superfamily signature 335 349 - -
Trre13g05445 952 PRINTS P-type cation-transporting ATPase superfamily signature 511 521 - -
Trre13g05445 952 FunFam Plasma membrane ATPase 138 222 - -
Trre13g05445 952 SFLD p-type atpase 317 644 IPR044492 -
Trre13g05445 952 Gene3D - 347 494 IPR023299 GO:0000166
Trre13g05445 952 Pfam haloacid dehalogenase-like hydrolase 331 607 - -
Trre13g05445 952 Gene3D - 332 630 IPR023214 -
Trre13g05445 952 Gene3D - 100 820 - -
Trre13g05445 952 FunFam ATPase 4 plasma membrane-type 587 820 - -
Trre13g05445 952 SUPERFAMILY HAD-like 331 640 IPR036412 -
Trre13g05445 952 PANTHER CALCIUM-TRANSPORTING ATPASE 24 886 - -
Trre13g05445 952 ProSitePatterns E1-E2 ATPases phosphorylation site. 337 343 IPR018303 -
Trre13g05445 952 PRINTS H+-transporting ATPase (proton pump) signature 624 649 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre13g05445 952 PRINTS H+-transporting ATPase (proton pump) signature 765 786 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre13g05445 952 PRINTS H+-transporting ATPase (proton pump) signature 451 469 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre13g05445 952 PRINTS H+-transporting ATPase (proton pump) signature 565 581 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre13g05445 952 PRINTS H+-transporting ATPase (proton pump) signature 593 609 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre13g05445 952 SMART Cation_ATPase_N_a_2 21 93 IPR004014 -
Trre13g05445 952 CDD P-type_ATPase_H 40 846 IPR006534 GO:0008553|GO:0016020|GO:0120029
Trre13g05445 952 Gene3D - 138 222 - -
Trre13g05445 952 NCBIfam plasma-membrane proton-efflux P-type ATPase 40 811 IPR006534 GO:0008553|GO:0016020|GO:0120029
Trre13g05445 952 NCBIfam HAD-IC family P-type ATPase 107 356 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre13g05445 952 NCBIfam HAD-IC family P-type ATPase 568 678 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre13g05445 952 SUPERFAMILY Calcium ATPase, transduction domain A 138 235 IPR008250 -
Trre13g05445 952 SUPERFAMILY Calcium ATPase, transmembrane domain M 20 852 IPR023298 -
Trre13g05445 952 SFLD C1.7: P-type atpase like 317 644 - -
Trre13g05445 952 Pfam E1-E2 ATPase 136 314 - -
Trre13g05445 952 Gene3D - 904 952 - -
Trre13g05445 952 FunFam Plasma membrane ATPase 347 494 - -
Trre13g05445 952 Pfam Cation transporter/ATPase, N-terminus 25 87 IPR004014 -
Trre13g05445 952 FunFam Plasma membrane ATPase 487 641 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05445 Trre-Chr13 58933681 58942625 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05445 1 952 Primary Pumps ATPases AT1G17260 80.189 0.0 1538
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05445 K01535 - zju:107404902 1647.1