Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05444 ATGACCAACAACAATGGATATTCATCATCACAGTTTGGGGACACAACGCTGACCAAAGTTTTCGTTGGAGGACTCGCATGGGAGACTCCCAAAGACACGCTTAGAGAACACTTTCAGAAGTATGGAGACATCCTTGAAGCCGTCATCATTTCCGATAAGCTTACCGGCAGATCCAAAGGCTACGGCTTTGTAACCTTCAAGGAACCAGAGGCGGCAAACAAGGCTTGCCAGGAACCAACACTCATCATCAATGGTCGCCGAGCCAACTGCAATATCGCATCTCTGGGTGCTCGCCGCCCAAGGACAAAGTCTTCTCCCACGAGTACTCCACCTTCTTCTCCTCCTCCTCTTCTTCCTCCTCCTCTAGGAACCAAGTACCCAAGCAGCCAGGTACAGTGGTATTATCCGATGACAATGCCTACCCCATTCCATCATCAACATGCTCACGCCTTTCCTTTCTACGGATACACGCCAACCTACATTGCAACAGATCATCATATGAATTACAATTACAATTACAATTACAATTACAATTACAATCAGAAGCTCAACTATGGAAGCTACGTGTATCCAAGGGTGGGCGCGATGCCAGTAATGTACCACGCTCTCTACAGAACCGAAGCTATGGGTGTCCCTGCACCACAAATCTTCAACCATGTCCAGTTGGCACCAGTGAATGCTTCCAAAGGGTAG 693 0.4805 MTNNNGYSSSQFGDTTLTKVFVGGLAWETPKDTLREHFQKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAANKACQEPTLIINGRRANCNIASLGARRPRTKSSPTSTPPSSPPPLLPPPLGTKYPSSQVQWYYPMTMPTPFHHQHAHAFPFYGYTPTYIATDHHMNYNYNYNYNYNYNQKLNYGSYVYPRVGAMPVMYHALYRTEAMGVPAPQIFNHVQLAPVNASKG 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05444 230 MobiDBLite consensus disorder prediction 107 122 - -
Trre13g05444 230 MobiDBLite consensus disorder prediction 94 122 - -
Trre13g05444 230 SUPERFAMILY RNA-binding domain, RBD 17 174 IPR035979 GO:0003676
Trre13g05444 230 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 107 IPR000504 GO:0003723
Trre13g05444 230 Gene3D - 2 108 IPR012677 -
Trre13g05444 230 FunFam Putative RNA-binding protein ARP1 12 101 - -
Trre13g05444 230 SMART rrm1_1 19 91 IPR000504 GO:0003723
Trre13g05444 230 PANTHER BOULE-RELATED 9 198 - -
Trre13g05444 230 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 86 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05444 Trre-Chr13 58929879 58931491 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05444 14 160 C2H2 Transcription Factor Family AT2G19380 30.323 4.35e-16 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05444 - - mtr:25499746 253.832