Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre13g05444 | ATGACCAACAACAATGGATATTCATCATCACAGTTTGGGGACACAACGCTGACCAAAGTTTTCGTTGGAGGACTCGCATGGGAGACTCCCAAAGACACGCTTAGAGAACACTTTCAGAAGTATGGAGACATCCTTGAAGCCGTCATCATTTCCGATAAGCTTACCGGCAGATCCAAAGGCTACGGCTTTGTAACCTTCAAGGAACCAGAGGCGGCAAACAAGGCTTGCCAGGAACCAACACTCATCATCAATGGTCGCCGAGCCAACTGCAATATCGCATCTCTGGGTGCTCGCCGCCCAAGGACAAAGTCTTCTCCCACGAGTACTCCACCTTCTTCTCCTCCTCCTCTTCTTCCTCCTCCTCTAGGAACCAAGTACCCAAGCAGCCAGGTACAGTGGTATTATCCGATGACAATGCCTACCCCATTCCATCATCAACATGCTCACGCCTTTCCTTTCTACGGATACACGCCAACCTACATTGCAACAGATCATCATATGAATTACAATTACAATTACAATTACAATTACAATTACAATCAGAAGCTCAACTATGGAAGCTACGTGTATCCAAGGGTGGGCGCGATGCCAGTAATGTACCACGCTCTCTACAGAACCGAAGCTATGGGTGTCCCTGCACCACAAATCTTCAACCATGTCCAGTTGGCACCAGTGAATGCTTCCAAAGGGTAG | 693 | 0.4805 | MTNNNGYSSSQFGDTTLTKVFVGGLAWETPKDTLREHFQKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAANKACQEPTLIINGRRANCNIASLGARRPRTKSSPTSTPPSSPPPLLPPPLGTKYPSSQVQWYYPMTMPTPFHHQHAHAFPFYGYTPTYIATDHHMNYNYNYNYNYNYNQKLNYGSYVYPRVGAMPVMYHALYRTEAMGVPAPQIFNHVQLAPVNASKG | 230 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre13g05444 | 230 | MobiDBLite | consensus disorder prediction | 107 | 122 | - | - | |
Trre13g05444 | 230 | MobiDBLite | consensus disorder prediction | 94 | 122 | - | - | |
Trre13g05444 | 230 | SUPERFAMILY | RNA-binding domain, RBD | 17 | 174 | IPR035979 | GO:0003676 | |
Trre13g05444 | 230 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 18 | 107 | IPR000504 | GO:0003723 | |
Trre13g05444 | 230 | Gene3D | - | 2 | 108 | IPR012677 | - | |
Trre13g05444 | 230 | FunFam | Putative RNA-binding protein ARP1 | 12 | 101 | - | - | |
Trre13g05444 | 230 | SMART | rrm1_1 | 19 | 91 | IPR000504 | GO:0003723 | |
Trre13g05444 | 230 | PANTHER | BOULE-RELATED | 9 | 198 | - | - | |
Trre13g05444 | 230 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 20 | 86 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre13g05444 | Trre-Chr13 | 58929879 | 58931491 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre13g05444 | 14 | 160 | C2H2 Transcription Factor Family | AT2G19380 | 30.323 | 4.35e-16 | 75.1 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre13g05444 | - | - | mtr:25499746 | 253.832 |