Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05435 ATGTGCATGTGTGGAATGGAAAAATATGGCGGTTCATCTAACCAGAAAGGGCTTCTTCTCACTTTTGAAGATAGGGATGGGAAAATATGGCGGTTCAGATATTCGTATTGGAACAGTAGCCAGAGCTATGTGATGACAAAAGGATGGAGCCGTTTCGGTAAGGAGAAGAAGCTTGATGATGGTGACATTGTTTCATTTCACCGTGGCCGTCATCAATTGTATAGACACAAGTTGTACATTGATTGGAGGACAAAGTCTCACTCTCAGTCTCAGGCTCATCATTCTCACCACCTCATCCAACCTCACATGATGATCTCCAGACTGCCTAATTTCTATCTTTCCAATCATCATCACCACTCGTCACCATCGTCATTATACACCTCCTCACAATACTCCCAGCTATCTAATTACCCCGCCACCGCTGCAATACATCCTCCTCCTTAA 444 0.4414 MCMCGMEKYGGSSNQKGLLLTFEDRDGKIWRFRYSYWNSSQSYVMTKGWSRFGKEKKLDDGDIVSFHRGRHQLYRHKLYIDWRTKSHSQSQAHHSHHLIQPHMMISRLPNFYLSNHHHHSSPSSLYTSSQYSQLSNYPATAAIHPPP 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05435 147 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 15 114 IPR044800 GO:0003700
Trre13g05435 147 SUPERFAMILY DNA-binding pseudobarrel domain 13 75 IPR015300 -
Trre13g05435 147 SMART B3_2 1 86 IPR003340 GO:0003677
Trre13g05435 147 Pfam B3 DNA binding domain 7 83 IPR003340 GO:0003677
Trre13g05435 147 CDD B3_DNA 6 68 IPR003340 GO:0003677
Trre13g05435 147 ProSiteProfiles B3 DNA-binding domain profile. 1 86 IPR003340 GO:0003677
Trre13g05435 147 Gene3D - 5 97 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05435 Trre-Chr13 58895196 58895639 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05435 12 94 B3 DNA Binding Superfamily AT1G01030 70.588 1.52e-33 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre13g05435 B3 5.2e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05435 K09287 - tpra:123889518 176.022