Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05434 ATGGAAGAAGTGAAAGGGTATTGTTCTGATAGCAGGGAAGAAGAAGAGGAGGAAGAGGAAGAAGGTGCAGATGAAAAGATCATCCCAATCACAAGAGAAGGAGGTGAAAACAGCAGCAGGTTACCGCTGGAAGAAGAAGATGGTAGGATGAATGAGGAAAGAAAGCAGGTAGAGGAAGTAGATTTGATGGAGTTGAGATTGGGAGGAGGAAGAGGGAGCAAGAGCAAGAGCAAGAGCAAGGAGGAAGATGGAATAGGAGGGAGTTCAAATTCAAAGGAGGAGGAGGAGGAGGAGGAGGAGGTATTGCCGGTGGTAGTGGAAAAAGAGCACATGTTTGACAAAGTAGTGACACCTAGTGACGTAGGGAAGCTGAATCGACTTGTAATTCCAAAGCAGTACGCAGAGAAGTACTTCCCATTGGATTCATCTAACCAGAAAGGGCTTCTTCTCACTTTTGAAGATAGGGATGGGAAAATATGGCGGTTCAGATATTCGTATTGGAACAGTAGCCAGAGCTATGTGATGACAAAAGGATGGAGTCGTTTCGTTAAGGAGAAGAAGCTTGATGCTGGTGACATTGTTTCATTTCACCGTGGCCGTCATCAATTGTACAGACACAAGTTGTACATTGATTGGAGGCCAAAGTCTCACTCTCAGTCTCAGGCTCACCACCACCACCACCTCATCCAACCTCACATGATGATCTCCGGACTGCCTAATTTCTATCTTCCCAATCATCATCACCACTCGTCACCATCGTCACTATACACCTCCTCACAATACTCCCAGCTACCTAATTATCCCGCCACCGCTGCAATACATCCTCCTCCTTATCCTCATCATTATTACAACAACAATTTCTACACTACCGGTAATGCACTTCCTCAACACCACCACCACCAACAACAACGATACCACCACCACCATCCTCCTGCTGAGCACCTTAATAATATGAATCCTCTCTATTATCTCCCCTCCTCGCCAATCACGCCTACAACAACAAGTGGTGGTGGCGGCGTTTATCAACACTTGCAGGGGCAAGGGCAACAACAAGATCAGAGAAATGTGAATGTTCCCATGAATATGATAATTGATTCTGTGCCGGTTGCACATCACCACCGTGGCGGCAATGATACCAATAGTAGCGGAAAACGGCGCCTGAGGCTATTTGGGGTGAACATGGAATGTGAATCTACTTCTGCAAATTCAGGAGCAGCAGCAACAACGTCAGGGGGAACTTCGGGGCTCTTTGATTCCCAATATCGGCGCCAGCAGTGA 1278 0.4687 MEEVKGYCSDSREEEEEEEEEGADEKIIPITREGGENSSRLPLEEEDGRMNEERKQVEEVDLMELRLGGGRGSKSKSKSKEEDGIGGSSNSKEEEEEEEEVLPVVVEKEHMFDKVVTPSDVGKLNRLVIPKQYAEKYFPLDSSNQKGLLLTFEDRDGKIWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFHRGRHQLYRHKLYIDWRPKSHSQSQAHHHHHLIQPHMMISGLPNFYLPNHHHHSSPSSLYTSSQYSQLPNYPATAAIHPPPYPHHYYNNNFYTTGNALPQHHHHQQQRYHHHHPPAEHLNNMNPLYYLPSSPITPTTTSGGGGVYQHLQGQGQQQDQRNVNVPMNMIIDSVPVAHHHRGGNDTNSSGKRRLRLFGVNMECESTSANSGAAATTSGGTSGLFDSQYRRQQ 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05434 425 SMART B3_2 112 216 IPR003340 GO:0003677
Trre13g05434 425 MobiDBLite consensus disorder prediction 74 91 - -
Trre13g05434 425 MobiDBLite consensus disorder prediction 38 65 - -
Trre13g05434 425 Gene3D - 105 228 IPR015300 -
Trre13g05434 425 CDD B3_DNA 110 198 IPR003340 GO:0003677
Trre13g05434 425 Pfam B3 DNA binding domain 112 213 IPR003340 GO:0003677
Trre13g05434 425 MobiDBLite consensus disorder prediction 292 311 - -
Trre13g05434 425 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 49 406 IPR044800 GO:0003700
Trre13g05434 425 FunFam B3 domain-containing protein 105 226 - -
Trre13g05434 425 SUPERFAMILY DNA-binding pseudobarrel domain 109 204 IPR015300 -
Trre13g05434 425 ProSiteProfiles B3 DNA-binding domain profile. 112 216 IPR003340 GO:0003677
Trre13g05434 425 MobiDBLite consensus disorder prediction 1 99 - -
Trre13g05434 425 MobiDBLite consensus disorder prediction 400 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05434 Trre-Chr13 58880484 58882217 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05434 91 396 RAV Transcription Factor Family AT2G46870 41.379 9.90e-65 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre13g05434 B3 2e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05434 K09287 - tpra:123889518 435.647