Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05432 ATGAAAGAAGATGATGATGATGCAGCGGCGAATGCAAATAGGGTTTCATCTCCCTCTTACTGGTTGGATGCCTGCGAGGATATCTCTTGCGATTTCATTGATTTTGATTCTTCTTCTTCTTCTACTACTACTCTAGACAACAACAACTCCACCACCACTACTACTGCTACTGCTGTTGATGATGTGCTTCTTCCTACTCCCAATAATCAAGACTTCTTTGGTGGTATTGATCGAATCTTTGACAGCATCAAGAACGGTGATGGTCTCCCTCAACCTAATGCTCTTGCTCTTGCTGTCCAAGAACAAGAACAAGAAGAAGATAATAGATGCAACAAAAGGGCTCGTCTTGCCGGATGCTACAACAACAATCACGACCGGAAAATCAATCATCAACCCACCAATGACAGGTTTGAGAGGTCTTTCAATAACAATAGGAAAAGACCAAGGGATGGTGGTGTCACTGATACTAGGAAGAAGAAGAGGCTAGCAGGAGGGAATCATCATCACCATCACGGTGGTTATTGGGTGAGGGATAAGTCTGGTTCCAATGACTTAGTCTTCCGCTCAGGTAATTGGGAACCCAATTCAACCCACCAAGACAACATCAAACAGGAGAAGAAGGAGGAGGAGGAGGAAACCCACCATACCACCGACCTACCTGCTAAGGAGAAGCTTCCTGAGGAAAAAGCTAGACAGTATCAGTTGGATGTCCTTGAACAGGCAAAGAGCAGAAATACCATTGCTTTTCTTGAAACTGGTGCTGGCAAAACCCTCATTGCTGTTCTTCTCATTAAATCTATACACCACACTTTACATCTCCAAAATAAGAAAATGCTTGCAGTCTTTTTGGTTCCTAAAGTTCCACTTGTTTATCAGCAAGCTGAGGTAATCCGTGAGCGCACCGGATATCAAGTCGGCCACTATTGTGGAGAAATGGGGCAGGATTTCTGGGATGCTCGAAGGTGGCACCGTGAATTCGATACCAAACATGTTTTAGTCATGACTGCTCAAATACTTTTGAACATTTTGAGGCATAGCATAATAAAAATGGACGCAATCAATCTCCTTATTCTGGACGAGTGCCACCATGCTGTGAAGAAACACCCATATTCGCTCGTGATGTCCGAGTTCTACCATACAACGCCCAAAGAAAAGAGGCCATCTGTATTTGGAATGACTGCTTCTCCTGTTAACTTAAAGGGTGTCTCCAGCCAAGTAGATTGTGCAATAAAAATTCGTAATCTTGAAAGTAAGCTAGATTCAATAGTTTGTACCATTAAAGATCGTAAAGAGCTGGAGAAACATGTTCCTATGCCCTCTGAAATTGTGGTGGAGTATGATAAAGCGGCCAGTCTGTGTTATTTACATGAGCAAATAAAGCAGATGGAGGCTGAAGTTGAGGAAGCTGCAAAATCTAGTTCAAGAAAAAGCAAATGGCAGTTTATGGGAGCTAGAGATGCTGGAGCTAAGGAAGAGCTGCGCCAAGTATATGGTGTTTCTGAAAGAACAGAAAGTGATGGAGCTGCAAACCTAATTCAGAAGTTGAGAGCTATTAATTATGCACTCGGTGAACTAGGACAGTGGTGTGCATATAAGGTTGCACTATCTTTTCTTGCAGCTCTGCAAAATGATGAAAGGGCAAACTACCAACTTGATGTCAAGTTTCAGGAATCGTATCTGAGTAAAGTTGTATCTCTTCTGAAATGTCAACTGTCTGAGGGTGCTGTTTCGGACAAAAATGGAGTAGATGGCCCAGAGAATGGTGCAGCTCACAGTGGGTCTGATGAACATGAAGAGATTGAAGAAGGAGAGCTTCCGGACAGTCACGTTGTCTCTGGTGGGGAGCATGTGGATGTCATAATAGGTGCTGCTGTGGCTGATGGCAAGGTGACCCCCAAGGTGCAGGCTTTAATCAAAATACTCCTCAAGTATCAGAACACAGACGACTTCCGTGCAATCATCTTTGTTGAGCGTGTTGTGTCTGCGTTAGTTCTACCCAAGGTTTTTACCGAGCTTCCTTCTCTTAGTTTTGTGAAGTGTGCAAGCTTAATTGGTCACAACAATAGCCAGGAAATGCGGACCCACCAAATGCATGATACAATTGCTAAGTTCCGTGATGGGCGGGTCACATTATTAGTTGCCACTAGTGTTGCTGAAGAAGGACTTGATATCCGGCAATGCAATGTTGTTATTCGCTTTGATCTCGCGAAGACCGTTCTGGCATACATTCAGTCTAGGGGGCGTGCTAGAAAGCCTGGGTCTGATTACATCCTAATGGTTGAGAGGGGAAATTTGTCACATGAAGCATTCCTAAGGAATGCCAGGAACAGTGAGGAAACTTTGCGGAGAGAAGCAATAGAGAGAACAGACCTTAGTCATCTGAAAGACACTTCAAGGTTGATTTCTGTAGATACCCATCCAGAAACAATTTACCAGGTGAAATCTACTGGTGCAGTAGTTAGCTTAAATTCTGCTGTAGGTCTTGTCCACTTTTACTGCTCTCAGCTACCTAGTGACAGATATTCAATTCTTCGCCCTGAGTTCATTATGGAGAAGCATGAAAACCCCGGAGGTCCCACTGAATATTCTTGCAGGCTTCAACTGCCGTGTAATGCACCATTTGAAAATCTGGAGGGCCCTATCTGCAGTTCAATGCGCTTGGCACAACAGGCTGTTTGTCTAGCTGCTTGCAAAAAATTGCATGAGATGGGAGCATTCACTGACATGCTATTGCCTGATAAAGGAAGTGGAGGAGAAAAAGAAAAGGCTGAGCAAACTGATGAAGGGGATGCACTTCCTGGGACTGCTAGACATAGGGAGTTCTATCCTGAAGGTGTGGCTGACATACTGAAGGGAGAATGGATCTTATCTGGAAAAGATGCTTGCAACGACTCCAAAATGCTTCATCTTTATATGTATACCATAAAGTGTGAGAATGTAGGCCATTCAAAAGATCCATTCTTGACCCAGGCTTCAGATTTTGCAGTACTTTTTGGCACTGAGCTGGATGCAGAGGTGTTATCGATGTCAATGGATCTATTTATCGCTCGAACTGTGACTACAAAGGCATCTCTTGTCTTTAGAGATTCAATAGATATCACAGAGAGTCAGTTAGCATCCCTGAAAAGCTTTCATGTAAGATTAATGAGCATTGTCTTGGATGTGGATGTTGAACCATCTACCACTCCTTGGGATCCTGCAAAAGCATATTTGTTTGTCCCAATGGTTGGCGATAAGTCTTTAGATCCTATGAACCAAATTGACTGGCATCTGGTTGAGACAATAATTGGAGCCGATGCATGGAAAAATCCCCTCCAGAAGGCTCGACCAGATGTTTACCTTGGTACTAATGAGAGAACTTTAGGTGGCGATAGAAGGGAATACGGATTTGGGAAATTGCGTCATGGCTTGGCTTTTGGGCAAAAATCACATCCAACCTATGGAATCAGAGGAGCTGTGGCCCAGTTTGATGTAGTGAAAGCTTCAGGATTGGTTCCTAACAGAGATTCCATGCAAACTCAAAAGCATATCAACATGACTAGCAAAGGAAAATTGATAATGGCAGATACCTGTACCAGTGCAGATGATCTGGTCGGAAGAATTGTAACTGCTGCTCATTCAGGGAAGAGGTTTTATGTTGATTCGATACGCTATGAAATGTCAGCAGAGAACTCTTTCCCTAGGAAAGAAGGTTATCTTGGTCCTCTGGAATACAGTTCCTATGCTGATTACTACAAGCAAAAATATGGTGTTGATTTGGTTTACAAGCAGCAACCTCTTATAAGAGGGCGTGGTGTATCATACTGCAAGAATCTTTTGTCACCTCGATTTGAACACAGTGAAGCACATGAAGGTGAATCTGAAGAGACTCAGGACAAAACTTACTATGTTTTCCTTCCTCCTGAGCTGTGTCTAGTACACCCACTGCCTGGATCACTCGTTCGTGGTGCTCAAAGGCTGCCTTCGATAATGAGGAGGGTTGAAAGCATGTTGCTTGCAGTTCAGCTTAAGAATATGATAAATTATCCTGTTAAGGCTTCCAAGATCTTGGAGGCCTTGACCGCTGCCTCTTGCCAGGAGACGTTCTGCTATGAAAGGGCGGAGCTTCTTGGAGATGCTTACCTTAAATGGGTTGTTAGTCGTTTTCTTTTCCTAAAATATCCACAGAAACATGAAGGCCAGCTTACTAGGATGAGACAACAAATGGTCAGTAACATGGTATTGTACCAGTATGCATTAAGTAAAGGTCTTCAATCATATATCCTAGCAGATCGCTTTGCCCCATCCAGATGGGCAGCTCCTGGGGTGCTGCCTGTCTTTGATGAGGATACGAAGGATGGGGAGTCATCTTTATTTGATGGAGAGCAGTCAATTTGTAAGATTGAGAGGATGGACAACACTGACGGATTTGATGATGAAATGGAAGATGGTGAGCTTGAGAGTGATTCAAGTTCTTACCGAGTTCTGTCCAGCAAGACACTTGCAGATGTTGTGGAAGCACTGATTGGGGTATATTATGTCGAAGGTGGTAAGAATGCTGCTAACCACCTTATGAAATGGATTGGTATTCACATTGAGATTGATCCCGATGAGATGGAGTCTACAACAAAGCCATCCATTATTCCGGACAGCATACTTAAGAGTGTTGATTTTGAGGCTTTAGAAGGTGCTCTAAATATTAAGTTTAAAGACAAGGGGCTGCTGATAGAATCCATAACTCATGCCTCCAGACCATCTTCAGGAGTATCCTGTTATCAGCGGCTGGAGTTTGTTGGTGATGCTGTCTTGGACCATCTTATAACCAAGCACTTATTTTTCTCGTACACAGATCTGCCACCAGGACGTCTGACTGACCTTCGAGCTGCTGCTGTAAACAATGAAAATTTTGCACGTGTTACAGTTAAACACAATCTTCACCTGCATCTGCGACATGGATCCAGTGCCCTAGAAAAACAGATTAAAGAATTTGTGAAGGAAGTTCAAGATGAATTGTCAAAACCAGGGTTTAACTCGTTTGGTCTTGGAGACTGCAAAGCTCCCAAGGTCCTTGGAGATATCCTTGAATCTATTGCTGGTGCCATTTTTCTTGACAGTGGGAGAAATACTGCTGTTGTTTGGAAGGTTTTTCAGCCTCTTTTGCATCCCATGGTTACACCAGAGACTTTGCCAATGCATCCTGTGCGTGAGCTGCAAGAGCGATGTCAACAGCAGGCCGAAGGTTTGGAGTATAGAGCAAGCCGTGCTGGCAATTTGGCCACTGTTGAAGTATTCATTGATGGGGTACAAGTAGGGGCTGCTCAAAATCCACAGAAAAAAATGGCACAGAAATTAGCTGCCAGAAACGCTCTTGTTGCTTTGAAAGAGAAGGAAATGGAGAAAATTCAGGAAAAAAACGATGAAAATGGGACAAAGAATGGCAACCAGACATTTACTAGACAAACATTAAATGATATCTGTTTGCGAAGAAGCTGGCCTATGCCAATATACCGGTGTGTGAGTGAGGGTGGTCCTGCACATGCAAAGAGGTTTACATTTGCAGTGCGCGTCAATACTACCGATAGAGGTTGGACGGATGAATGTGTTGGAGAGCCAATGCCAAGCGTCAAGAAGGCCAAAGACTCAGCTGCTGTTCTTCTCTTAGAGCTAATAAACAAATTATACTCATGA 5667 0.4352 MKEDDDDAAANANRVSSPSYWLDACEDISCDFIDFDSSSSSTTTLDNNNSTTTTTATAVDDVLLPTPNNQDFFGGIDRIFDSIKNGDGLPQPNALALAVQEQEQEEDNRCNKRARLAGCYNNNHDRKINHQPTNDRFERSFNNNRKRPRDGGVTDTRKKKRLAGGNHHHHHGGYWVRDKSGSNDLVFRSGNWEPNSTHQDNIKQEKKEEEEETHHTTDLPAKEKLPEEKARQYQLDVLEQAKSRNTIAFLETGAGKTLIAVLLIKSIHHTLHLQNKKMLAVFLVPKVPLVYQQAEVIRERTGYQVGHYCGEMGQDFWDARRWHREFDTKHVLVMTAQILLNILRHSIIKMDAINLLILDECHHAVKKHPYSLVMSEFYHTTPKEKRPSVFGMTASPVNLKGVSSQVDCAIKIRNLESKLDSIVCTIKDRKELEKHVPMPSEIVVEYDKAASLCYLHEQIKQMEAEVEEAAKSSSRKSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVALSFLAALQNDERANYQLDVKFQESYLSKVVSLLKCQLSEGAVSDKNGVDGPENGAAHSGSDEHEEIEEGELPDSHVVSGGEHVDVIIGAAVADGKVTPKVQALIKILLKYQNTDDFRAIIFVERVVSALVLPKVFTELPSLSFVKCASLIGHNNSQEMRTHQMHDTIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMVERGNLSHEAFLRNARNSEETLRREAIERTDLSHLKDTSRLISVDTHPETIYQVKSTGAVVSLNSAVGLVHFYCSQLPSDRYSILRPEFIMEKHENPGGPTEYSCRLQLPCNAPFENLEGPICSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGGEKEKAEQTDEGDALPGTARHREFYPEGVADILKGEWILSGKDACNDSKMLHLYMYTIKCENVGHSKDPFLTQASDFAVLFGTELDAEVLSMSMDLFIARTVTTKASLVFRDSIDITESQLASLKSFHVRLMSIVLDVDVEPSTTPWDPAKAYLFVPMVGDKSLDPMNQIDWHLVETIIGADAWKNPLQKARPDVYLGTNERTLGGDRREYGFGKLRHGLAFGQKSHPTYGIRGAVAQFDVVKASGLVPNRDSMQTQKHINMTSKGKLIMADTCTSADDLVGRIVTAAHSGKRFYVDSIRYEMSAENSFPRKEGYLGPLEYSSYADYYKQKYGVDLVYKQQPLIRGRGVSYCKNLLSPRFEHSEAHEGESEETQDKTYYVFLPPELCLVHPLPGSLVRGAQRLPSIMRRVESMLLAVQLKNMINYPVKASKILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQYALSKGLQSYILADRFAPSRWAAPGVLPVFDEDTKDGESSLFDGEQSICKIERMDNTDGFDDEMEDGELESDSSSYRVLSSKTLADVVEALIGVYYVEGGKNAANHLMKWIGIHIEIDPDEMESTTKPSIIPDSILKSVDFEALEGALNIKFKDKGLLIESITHASRPSSGVSCYQRLEFVGDAVLDHLITKHLFFSYTDLPPGRLTDLRAAAVNNENFARVTVKHNLHLHLRHGSSALEKQIKEFVKEVQDELSKPGFNSFGLGDCKAPKVLGDILESIAGAIFLDSGRNTAVVWKVFQPLLHPMVTPETLPMHPVRELQERCQQQAEGLEYRASRAGNLATVEVFIDGVQVGAAQNPQKKMAQKLAARNALVALKEKEMEKIQEKNDENGTKNGNQTFTRQTLNDICLRRSWPMPIYRCVSEGGPAHAKRFTFAVRVNTTDRGWTDECVGEPMPSVKKAKDSAAVLLLELINKLYS 1888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05432 1888 ProSiteProfiles PAZ domain profile. 1168 1308 IPR003100 GO:0005515
Trre13g05432 1888 MobiDBLite consensus disorder prediction 122 222 - -
Trre13g05432 1888 Gene3D - 1723 1801 - -
Trre13g05432 1888 MobiDBLite consensus disorder prediction 911 935 - -
Trre13g05432 1888 FunFam Endoribonuclease Dicer 1 1188 1306 - -
Trre13g05432 1888 MobiDBLite consensus disorder prediction 577 609 - -
Trre13g05432 1888 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 237 414 IPR014001 -
Trre13g05432 1888 Pfam Type III restriction enzyme, res subunit 239 396 IPR006935 GO:0003677|GO:0005524|GO:0016787
Trre13g05432 1888 MobiDBLite consensus disorder prediction 184 198 - -
Trre13g05432 1888 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1725 1788 IPR014720 -
Trre13g05432 1888 MobiDBLite consensus disorder prediction 590 609 - -
Trre13g05432 1888 FunFam Endoribonuclease dicer-like 1 820 921 - -
Trre13g05432 1888 SUPERFAMILY RNase III domain-like 1550 1720 IPR036389 GO:0004525|GO:0006396
Trre13g05432 1888 SMART DRBM_3 1726 1787 IPR014720 -
Trre13g05432 1888 SMART DRBM_3 1811 1884 IPR014720 -
Trre13g05432 1888 Pfam Ribonuclease III domain 1365 1510 IPR000999 GO:0004525|GO:0006396
Trre13g05432 1888 Pfam Ribonuclease III domain 1586 1699 IPR000999 GO:0004525|GO:0006396
Trre13g05432 1888 SUPERFAMILY dsRNA-binding domain-like 1814 1883 - -
Trre13g05432 1888 Gene3D Dicer dimerisation domain 820 922 IPR038248 -
Trre13g05432 1888 MobiDBLite consensus disorder prediction 914 935 - -
Trre13g05432 1888 SUPERFAMILY RNase III domain-like 1324 1528 IPR036389 GO:0004525|GO:0006396
Trre13g05432 1888 Gene3D paz domain 1187 1306 - -
Trre13g05432 1888 CDD SF2_C_dicer 630 760 - -
Trre13g05432 1888 SMART riboneu5 1566 1722 IPR000999 GO:0004525|GO:0006396
Trre13g05432 1888 SMART riboneu5 1347 1529 IPR000999 GO:0004525|GO:0006396
Trre13g05432 1888 Coils Coil 1780 1800 - -
Trre13g05432 1888 FunFam Endoribonuclease dicer-like protein 1330 1522 - -
Trre13g05432 1888 Pfam Helicase conserved C-terminal domain 633 750 IPR001650 -
Trre13g05432 1888 MobiDBLite consensus disorder prediction 199 222 - -
Trre13g05432 1888 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 277 764 IPR027417 -
Trre13g05432 1888 Gene3D - 224 468 IPR027417 -
Trre13g05432 1888 FunFam Endoribonuclease dicer-like 1 624 786 - -
Trre13g05432 1888 FunFam Endoribonuclease dicer-like 1 1545 1720 - -
Trre13g05432 1888 ProSiteProfiles Ribonuclease III family domain profile. 1351 1510 IPR000999 GO:0004525|GO:0006396
Trre13g05432 1888 SMART PAZ_2_a_3 1172 1332 IPR003100 GO:0005515
Trre13g05432 1888 Gene3D Ribonuclease III domain 1329 1525 IPR036389 GO:0004525|GO:0006396
Trre13g05432 1888 Gene3D Ribonuclease III domain 1546 1720 IPR036389 GO:0004525|GO:0006396
Trre13g05432 1888 SUPERFAMILY PAZ domain 1189 1308 IPR036085 GO:0005515
Trre13g05432 1888 CDD DSRM_DCL_plant 1816 1885 - -
Trre13g05432 1888 FunFam Endoribonuclease dicer-like protein 225 465 - -
Trre13g05432 1888 CDD RIBOc 1347 1526 IPR000999 GO:0004525|GO:0006396
Trre13g05432 1888 ProSiteProfiles Ribonuclease III family domain profile. 1551 1699 IPR000999 GO:0004525|GO:0006396
Trre13g05432 1888 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1810 1881 - -
Trre13g05432 1888 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1810 1885 IPR014720 -
Trre13g05432 1888 Pfam Dicer dimerisation domain 825 913 - -
Trre13g05432 1888 CDD RIBOc 1567 1722 IPR000999 GO:0004525|GO:0006396
Trre13g05432 1888 MobiDBLite consensus disorder prediction 128 160 - -
Trre13g05432 1888 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 825 920 IPR005034 GO:0016891
Trre13g05432 1888 ProSitePatterns Ribonuclease III family signature. 1586 1594 IPR000999 GO:0004525|GO:0006396
Trre13g05432 1888 Pfam PAZ domain 1193 1328 IPR003100 GO:0005515
Trre13g05432 1888 CDD DEXHc_dicer 229 428 - -
Trre13g05432 1888 SMART helicmild6 663 752 IPR001650 -
Trre13g05432 1888 FunFam endoribonuclease Dicer homolog 1 1816 1885 - -
Trre13g05432 1888 PANTHER DICER-RELATED 1172 1791 - -
Trre13g05432 1888 Gene3D - 1816 1885 - -
Trre13g05432 1888 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 636 797 IPR001650 -
Trre13g05432 1888 Gene3D - 623 789 IPR027417 -
Trre13g05432 1888 SMART ultradead3 226 429 IPR014001 -
Trre13g05432 1888 SUPERFAMILY dsRNA-binding domain-like 1681 1809 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05432 Trre-Chr13 58847596 58857172 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05432 649 792 Eukaryotic Initiation Factors Gene Family AT5G11200 28.571 6.54e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05432 K11592 - gmx:100811631 3172.1