Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05430 ATGGACGCTTACTCATCCGGAGAAGAAGTGGTTGTCAAGACAAGAAAACCGTATACAATCACAAAACAAAGAGAACGATGGACAGAAGAGGAACATGATAGATTTTTAGAAGCTCTCAAGCTATATGGGCGAGCATGGCAGCGCATAGAAGAGCATATAGGAACAAAAACTGCTGTGCAAATCAGGAGCCATGCCCAAAAATTCTTTTCAAAGTTGGAGAAGGAAGCACTTGTAAAAGGTGCTGCATTAGGACAAGCTCTTGACATAGACATTCCCCCTCCACGACCCAAAAGGAAACCAAACAATCCTTATCCTCGCAAGACCAATGTTGGTACCCCAACATTACATAGTGGAGCAAAGTATGGAAAGCCACTTATTGCAGTTGCATCTTCGCATGGTAAACAGGCAATGGATTTTGAGAAAGAATCACCTCCAGAGAAGCATAAAGATGAGGAAAGGTCAACAACTGGAAAAGAAAATAACAATGACAATTCTTCAAAAGCATTTACAATCCTTAAGGAGGCGCCCTGTTCGTCTGTATCTTCAGCAATCCAGAGTTCAATCTCAAATTTAGTGCCACTGACAAACTCCTGCACCTTGAGGGAGTTTACACCTTCAGTGAAAGAGGTAATAACTCGAGATGAAACAAATGAATCTTTTCCTGCTAGTGATATTGAAAATCAGATGTTGGAGATTGATGATGGCAAACACACACATAAGACTGATGGAACTTATAAAACCTCTAAGTTGGATAATTCGTGTTCTCCTAAATCGGTTCAAGTTGAGAAAACAGATGGTCTTACTTCGCCATTAACAATAGATGAGATGCAAAATAATCAGAATTACCCAAGACATGTCACTGTGCACGTTGTTGATGGGAACCTTGGAACTAGTACTCAAACTCCACCACAAGATATGTTGATTCAAGACTCCACATTTCAGCCAATAGGAGGGATTAATGGTCAACGTAATCTTTTCACAAATTCAGCTGCATCAAACACAAGTGAAAGTCAAAATAACATGGCACGATCCTCTATTCATCAATCATTTCCTCCGTGCCCTCCCTTTGCACAACATAATCATGATGATTATCAATCCTTTCTCAACATGTCTTCTACATTTTCAAGTCTTCTTGTTTCTACCTTGCTGCAACACCCTGCAGCGCATGCTGCGGCAAGTTTTGCTGCTACATTTTGGCCCTATGCAAATGTAGAAAGTTCAGCTGATTCTCCTGCTTGCTCTCAAGGAGCTTTTCCATCTAGACAAATTGGTTCACCTCCTGGCGTAGCAGCTATTGCAGCTGCTACGGTAGCTGCTGCAACTGCATGGTGGGCAGCTCATGGACTGCTTCCTTTGTGCGCTCCACTCCATACAGCTTTTGCCTGTCCTCCTGCAACAGCAACTGTAGTTCCATCAACAAATCCTAGTGAAGCACCACCAAAGACAAAACAAGGAGATATTACACTACAAAATCCTCCTCTGCAAGATCAGATATTGGATCCAGAAGACTCGGAAGCTTTGCTAGCTCAGCATTCAGCTTCCAAGTCACCAGGTGTTTCTTTATCTGAATCTGAGGAGAGTGGAGATGCCAAGTTAAATACTTCAGCAAAGGTCACTATTAATCTTGACATAAACCAACCAATTTCTGAGAACCCTGACCCCAACAAAATGGAGGGCAGAAAACTGGTAGACAGGTCTTCTTGTGGTTCCAACACAACCTCTAGCTGTGAAGAGACTGATGTGCTAGAGAAGGATGGTAAAGAAAAGGAAGATTCCAAAGCACCTGAGGCAGACCATTTAGCCACTGATCCTAGTAGTCGTCGATATAGAAGCATTAGCAACCTTATTGATTCTTGGAAGGAGGTGTCTGAAGAGGGACGACTTGCCTTTCGGGCTCTATTTTCCAGAGAGGTGTTGCCCCAAAGCTTTTCACCTCCTCATGATTTGATAGTTAAGGATCAACAGATGGACAACATGAAACATAATGGGCAAAATGTAGACGACAGAGATCAACTTGACAGCAAGAAATGCAGTTCTAATTGCGACCGGGTGCAGCAAAACCTACCATTTGTACAAAATAACAATGAGGAGGATGGACTGCTAACCTTAGGTCTCGGACAAGGTAAGCTTAAGACTCGTCGAACAGGGTTTAAACCATACAAAAGATGTTTAGTAGAGGCCAAGGAAAACAGGGTTGGAACGGCTTGCAATCAAGTTGAAGAGACGGGTCCCAAGAGGATACGCTTGGAAGGGGGGACTTCTACTTGA 2268 0.4286 MDAYSSGEEVVVKTRKPYTITKQRERWTEEEHDRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSKLEKEALVKGAALGQALDIDIPPPRPKRKPNNPYPRKTNVGTPTLHSGAKYGKPLIAVASSHGKQAMDFEKESPPEKHKDEERSTTGKENNNDNSSKAFTILKEAPCSSVSSAIQSSISNLVPLTNSCTLREFTPSVKEVITRDETNESFPASDIENQMLEIDDGKHTHKTDGTYKTSKLDNSCSPKSVQVEKTDGLTSPLTIDEMQNNQNYPRHVTVHVVDGNLGTSTQTPPQDMLIQDSTFQPIGGINGQRNLFTNSAASNTSESQNNMARSSIHQSFPPCPPFAQHNHDDYQSFLNMSSTFSSLLVSTLLQHPAAHAAASFAATFWPYANVESSADSPACSQGAFPSRQIGSPPGVAAIAAATVAAATAWWAAHGLLPLCAPLHTAFACPPATATVVPSTNPSEAPPKTKQGDITLQNPPLQDQILDPEDSEALLAQHSASKSPGVSLSESEESGDAKLNTSAKVTINLDINQPISENPDPNKMEGRKLVDRSSCGSNTTSSCEETDVLEKDGKEKEDSKAPEADHLATDPSSRRYRSISNLIDSWKEVSEEGRLAFRALFSREVLPQSFSPPHDLIVKDQQMDNMKHNGQNVDDRDQLDSKKCSSNCDRVQQNLPFVQNNNEEDGLLTLGLGQGKLKTRRTGFKPYKRCLVEAKENRVGTACNQVEETGPKRIRLEGGTST 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05430 755 MobiDBLite consensus disorder prediction 468 497 - -
Trre13g05430 755 MobiDBLite consensus disorder prediction 87 119 - -
Trre13g05430 755 SUPERFAMILY Homeodomain-like 18 74 IPR009057 -
Trre13g05430 755 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 73 IPR017930 -
Trre13g05430 755 ProSiteProfiles Myb-like domain profile. 19 69 IPR001005 -
Trre13g05430 755 MobiDBLite consensus disorder prediction 331 347 - -
Trre13g05430 755 NCBIfam myb-like DNA-binding domain, SHAQKYF class 22 71 IPR006447 GO:0003677
Trre13g05430 755 PANTHER SWI/SNF COMPLEX-RELATED 7 682 - -
Trre13g05430 755 MobiDBLite consensus disorder prediction 331 354 - -
Trre13g05430 755 MobiDBLite consensus disorder prediction 232 263 - -
Trre13g05430 755 MobiDBLite consensus disorder prediction 232 246 - -
Trre13g05430 755 MobiDBLite consensus disorder prediction 135 158 - -
Trre13g05430 755 ProSiteProfiles SANT domain profile. 22 73 IPR017884 -
Trre13g05430 755 SMART sant 23 71 IPR001005 -
Trre13g05430 755 FunFam protein REVEILLE 6 isoform X1 26 74 - -
Trre13g05430 755 MobiDBLite consensus disorder prediction 510 531 - -
Trre13g05430 755 CDD SANT 26 69 IPR001005 -
Trre13g05430 755 Gene3D - 26 73 - -
Trre13g05430 755 MobiDBLite consensus disorder prediction 247 263 - -
Trre13g05430 755 MobiDBLite consensus disorder prediction 543 605 - -
Trre13g05430 755 Pfam Myb-like DNA-binding domain 24 67 IPR001005 -
Trre13g05430 755 MobiDBLite consensus disorder prediction 578 605 - -
Trre13g05430 755 MobiDBLite consensus disorder prediction 132 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05430 Trre-Chr13 58832960 58842169 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre13g05430 Myb_DNA-binding 2.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05430 K12133 - gmx:780540 1002.28