Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05429 ATGGCCGATCTTCCTGAATCGAAGAATGAAGAATTACAAGATGAAGAAAGTTTCGCATATGCTATTCAGCTGAGCAACTCTGTTGTGCTTTCCATGGCACTTCAATCCGCAACTGAACTCGGCGTTTTTGAAATCTTGCAAAAAGCCGGTACAGATGTTCAACTCTCCGCCGACGATATCGCTTCCCGTCTTTCCTGCACCAATCCAGATGCCCCTAAAATGTTAGATCGTATTCTCGCTCTTCTCGCCTCTCACTCCGTCATCAACTGTTCTGTACTTCCCGATCAACATAACCTTGGATCCTTTCACAGATTCTACACTATGGCTCCTGTTGCCAAATTCTTTGCTCCTAATTCCGATGGCGTTTCTTTAGGACCCTTGATTGCATTGCATCATGATAAGATCTTCTTAGATAGCTGGTCTCAGCTTAAAGATGCAATTCGCGAAGGGGGTGTTCCATTCAACAGGGTTCATGGCACACATGCCTTTGAGTATCCCAGCATGGACTCAAGGTTCAATCAAGTTTTTAATACAGCAATGATCAATCACACCACTATTGTTATGAAGAAGGTTCTTGAATGCTACAAAGGTTTTGATGAGGTCAAAAGGCTTGTGGATGTTGGTGGTGGTCTTGGGGTCAACATTAACTTGATCACTTCAAAATACCCTCATATACAGGGCATCAATTTCGACTTGCCTCATGTCATAGAAAATGCTCCTTCTTATCCTGGAGTTGAACACGTTGGGGGAGATATGTTTGAAACTGTGCCTAAAGCTGATGCTATCTTTATGAAGTGGATACTTCATGACTGGAGTGATGAGCAGTGCTTGAAGCTTTTGAAGAATTGCTATGATGCTATTCCAGATGATGGAAAGGTGATTGTTTTGGAGGCAGTTCTTTCTATTATACCCGAGAATAATGCTGCCTGGAAATTTGCGGCCCAATCAGATGTTCTGATGATGACTCAAAATCCAGGAGGGAAAGAGCGAACTGAGCAAGAATTCATGGATTTAGCAAATGGAGCTGGATTTAGTGGCATTAGATATGAATGTTATGTCCATACTTTTTGGGTTATGGAGTTCTTCAAGTAG 1092 0.424 MADLPESKNEELQDEESFAYAIQLSNSVVLSMALQSATELGVFEILQKAGTDVQLSADDIASRLSCTNPDAPKMLDRILALLASHSVINCSVLPDQHNLGSFHRFYTMAPVAKFFAPNSDGVSLGPLIALHHDKIFLDSWSQLKDAIREGGVPFNRVHGTHAFEYPSMDSRFNQVFNTAMINHTTIVMKKVLECYKGFDEVKRLVDVGGGLGVNINLITSKYPHIQGINFDLPHVIENAPSYPGVEHVGGDMFETVPKADAIFMKWILHDWSDEQCLKLLKNCYDAIPDDGKVIVLEAVLSIIPENNAAWKFAAQSDVLMMTQNPGGKERTEQEFMDLANGAGFSGIRYECYVHTFWVMEFFK 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05429 363 Pfam O-methyltransferase domain 140 345 IPR001077 GO:0008171
Trre13g05429 363 Gene3D Vaccinia Virus protein VP39 117 363 IPR029063 -
Trre13g05429 363 FunFam Caffeic acid 3-O-methyltransferase 3 115 - -
Trre13g05429 363 Coils Coil 358 363 - -
Trre13g05429 363 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 22 363 IPR016461 GO:0008168
Trre13g05429 363 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 120 361 IPR029063 -
Trre13g05429 363 PIRSF O-mtase 2 363 IPR016461 GO:0008168
Trre13g05429 363 Gene3D - 3 115 IPR036388 -
Trre13g05429 363 FunFam Caffeic acid O-methyltransferase 116 363 - -
Trre13g05429 363 Pfam Dimerisation domain 32 83 IPR012967 GO:0046983
Trre13g05429 363 PANTHER O-METHYLTRANSFERASE 24 348 IPR016461 GO:0008168
Trre13g05429 363 SUPERFAMILY "Winged helix" DNA-binding domain 13 118 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05429 Trre-Chr13 58820692 58824390 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05429 11 363 Monolignol Biosynthesis Gene Families AT5G54160 52.125 5.04e-138 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05429 K13066 - gmx:100803633 587.8