Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05428 ATGGCTCCTTCAACAACAACTGAATCTAATAAACAACATATCCCCAACGGAAAAGACAAGCATCTCAAACCACATGAACAACAAGAAGATGATGATGATGATGATGCCCTCCAATTTGCCAATCAAATAACAGGTTCCATTGTTGTTCCATTGGCTTTGAGGTCAGCCATTGATCTTGGCATCTTTGACATCCTAGCCAAAGCCGGCGAAGGCGCAGAACTCTCTGCACAAGACATTGCTGTTAAGATTGGAACCAACAACCCGGAAGCACCAACAATGTTGAATCGTCTTCTTAGGTTGTTGGCCAGTCACTCTATTCTAAACTCCTCTGTTCCTCAACATGATCATCCACAAAACCTTCAAATATTCTACAGCCTCTCTAATCGCTCCAAATATTTTGTCACCGATGCTGATGGCATCTCGTTCGGTCCCACCTTGGCATTACTTCTCGACAATGTCTTCTACCAAAGCTGGTCGGAGCTGAAAGGAGCGATAGTGGAAGGAGGAATACCGTTCAATAGAGTATATGGAATGCATGCCTTTGAGTATCCACGTGTCGATCCAAGGTTCAATGATGTTTTCAACAAAGCTATGCTTAGTTCAACCACTATTAATATGAAGAGGATTCTTGAAGTTTATCAAGGTTTTGAGCATGTCACTAAGCTCGTTGACGTTGGTGGTGGTCTTGGACATAACCTCAAATTGATCACTGCCAAATATTCTCATATTCAGGGAATTAATTTTGACTTGCCTCATGTGCTACAAAATGCTCCTAACTACCCAGGTGTTGAACATGTGGGAGGAGATATGTTTGAGAGCGTTCCTGCAGGGGATGCCATTTTTATGAAGTGGATACTTCATGATTGGAGTGATGAACACTGCTTGAAGCTGTTGAAAAATTGTTACAAAGCTATTCCCGAGGATGGAAAGGTTATTGTTGTGGACACAATCCTTCCGACCATGGCTGAGACAACAGGGAGTGCAAAGTTTGGTTTCGCGTCTGATCTTTTAATGATGACTCAAAATCCAGGAGGAAAAGAGAGAAGTGAGCAGGAATTCATAGAATTGGCAAAAGGATCTGGATTCAGTGGCATCAAACCTATATGTTGTGTGTCTGGACTATGGGTTATTGAGTTCTTTAAGTAG 1146 0.4223 MAPSTTTESNKQHIPNGKDKHLKPHEQQEDDDDDDALQFANQITGSIVVPLALRSAIDLGIFDILAKAGEGAELSAQDIAVKIGTNNPEAPTMLNRLLRLLASHSILNSSVPQHDHPQNLQIFYSLSNRSKYFVTDADGISFGPTLALLLDNVFYQSWSELKGAIVEGGIPFNRVYGMHAFEYPRVDPRFNDVFNKAMLSSTTINMKRILEVYQGFEHVTKLVDVGGGLGHNLKLITAKYSHIQGINFDLPHVLQNAPNYPGVEHVGGDMFESVPAGDAIFMKWILHDWSDEHCLKLLKNCYKAIPEDGKVIVVDTILPTMAETTGSAKFGFASDLLMMTQNPGGKERSEQEFIELAKGSGFSGIKPICCVSGLWVIEFFK 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05428 381 Pfam Dimerisation domain 52 102 IPR012967 GO:0046983
Trre13g05428 381 Pfam O-methyltransferase domain 158 363 IPR001077 GO:0008171
Trre13g05428 381 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 139 379 IPR029063 -
Trre13g05428 381 SUPERFAMILY "Winged helix" DNA-binding domain 31 136 IPR036390 -
Trre13g05428 381 FunFam Caffeic acid 3-O-methyltransferase 18 133 - -
Trre13g05428 381 PANTHER O-METHYLTRANSFERASE 43 362 IPR016461 GO:0008168
Trre13g05428 381 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 41 381 IPR016461 GO:0008168
Trre13g05428 381 PIRSF O-mtase 18 381 IPR016461 GO:0008168
Trre13g05428 381 MobiDBLite consensus disorder prediction 1 33 - -
Trre13g05428 381 Gene3D - 19 133 IPR036388 -
Trre13g05428 381 MobiDBLite consensus disorder prediction 13 28 - -
Trre13g05428 381 FunFam Caffeic acid O-methyltransferase 134 381 - -
Trre13g05428 381 Gene3D Vaccinia Virus protein VP39 134 381 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05428 Trre-Chr13 58814953 58816725 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05428 33 381 Monolignol Biosynthesis Gene Families AT5G54160 53.009 1.87e-134 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05428 K13066 - gmx:100789402 508.834