Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05425 ATGCAGATCAACAATCATCATCATCATCACTCAGTCGACAAGTTTCTTCCTCCCACTATGCTTAGAGTCTTGCTCGTCGAAGCTGATGATTCTACCCGCCACATTATTTCTGCACTTCTTCGCAAATGCGGTTACAAAGTTGCTGCAGTTCGTGATGCCTTAAAGGCATGGGAGACATTGAAGAACAAATCATCTGAAATAGATCTCGTATTAACAGAAGTGGAGTTGCCATCAATATCTGGTTTTTCACTACTTACTTCAATCATGGAGCTTGACAATTGCAAAAACATTCCTGTCATAATGATGTCTTCTAACGATTCAGTTAGCACGGTGTTCAAATGCATGCTAAATGGGGCCGTCGATTTTCTCATTAAACCTGTTCGGAGGAATGAGCTTAGGAACTTGTGGCAACATGTGTGGAGAAGACATACTATTAGCATGCCTCCTCAAAATATAACATTTCCACAGAATAAACTTGATGTTGCTGCAGAAAACAATGCTGCAAGCAATAATTCTAGTGGTTCTGTGGCTTCCACTCAAAAAAATGTTGAATGCAGCGAAAAAACTAGTGAGGCTCAAGATATGTCCCAGCTGAAGAGTTCTTCATGTTTGAGCAATACCAGCCAGGCAAAGCACGAAAATTCTACCAGATATGAAAGGGAGTCTGCTGAGTATAACGATGAAACTGGAGAGAAATCAACTATAATAGCTTCTAAAGGTGCAGGGTATGACAAAATTTCAACAGGTTTAAGGCTTGGTCAAAGCTATGATTGTATAGAAACAGAAAACCAAGATGAAGTGTTAAAAACAGAGTTTGGCAAAGCCAATCCTCATACGAATTCAAAGATTCATCAATGGAATGATGAAATAGAAGAACATTCTGCTGGAGCTATTGACTTGATGGCTACTTTTCAGAATCTTCCAAAGAGCAGTTATGCAGATTGTCGTTTCAACGCTGGTGGTAACACAGCCAATTTTGATACACAATTGGATCTTTCTTTACAAAGAGATTTTCCTGGAAGCTCACCTAAACCTACCATTGAAGAAAGGCAAATATTGAATCATTCAAATGCTTCTGCGTTTTCTTTGTATGGCAGCAGTACATTGTTGAAGCCTTTATTTCCAACAAACAATTCGCATGAATCACAAAAATTATCGGAAAATACAAATATTGGTCATCAGTATGATATTAAAAAACTAAAGCAGGAAAATATCACTTATCTAGCAATTGGTCAGCCTGAACAAGTTGATGCAAAATTTCTTAACAGTCAACTTAAATTCTTTCCTACCACCGGGTCTGCTTCTGATAATAAGTCTATGGAACATGATGTTTTTCATTCTATGTTTGATGCACAGTCAGGTATGCATCCCACATGGACACCAAAATCAGTGTTCCAAAAAGAGACTTCTCCATTTCCCTCAAGTATTTCCTCCCACTCCAACCCTAAAAGTCAGAACTCAGAACCTCGCCACTGGTCGGATGATGCCACCTATACTTGTGATCAAAATGTAAATGATCAAAGCAATATAGATTGTGACGAATCTCCATCTAACGGTCAAAGTTGTGGTACAAGTTTTTACCATGATGTGGAAAATTGCAACACTAGTGGTGTATGTGAAGAAGGCATAGGAAGCGGAAGTGATGGAAATGCCCCTTCAGCAGTTGTAGGCAAGAACAACGCTGAAAATTCTATGAGCAATGATCACTATGATGGGCTTAGAGGCACAAATTCTCATCGCACCAGCCAAAGAGAAGCAGCTCTAACGAAGTTTCGACTGAAGCGAAAAGACAGATGCTATGACAAAAAGGTCCGATATGAAAGCCGGAAAAGACAGGCAGAGAACCGCCCCCGGGTGAAAGGGCAGTTTGTTCGCCAAGTACATGGTGAACTTCCAGTAGCTGATACCGGAAGTTACTGA 1920 0.4 MQINNHHHHHSVDKFLPPTMLRVLLVEADDSTRHIISALLRKCGYKVAAVRDALKAWETLKNKSSEIDLVLTEVELPSISGFSLLTSIMELDNCKNIPVIMMSSNDSVSTVFKCMLNGAVDFLIKPVRRNELRNLWQHVWRRHTISMPPQNITFPQNKLDVAAENNAASNNSSGSVASTQKNVECSEKTSEAQDMSQLKSSSCLSNTSQAKHENSTRYERESAEYNDETGEKSTIIASKGAGYDKISTGLRLGQSYDCIETENQDEVLKTEFGKANPHTNSKIHQWNDEIEEHSAGAIDLMATFQNLPKSSYADCRFNAGGNTANFDTQLDLSLQRDFPGSSPKPTIEERQILNHSNASAFSLYGSSTLLKPLFPTNNSHESQKLSENTNIGHQYDIKKLKQENITYLAIGQPEQVDAKFLNSQLKFFPTTGSASDNKSMEHDVFHSMFDAQSGMHPTWTPKSVFQKETSPFPSSISSHSNPKSQNSEPRHWSDDATYTCDQNVNDQSNIDCDESPSNGQSCGTSFYHDVENCNTSGVCEEGIGSGSDGNAPSAVVGKNNAENSMSNDHYDGLRGTNSHRTSQREAALTKFRLKRKDRCYDKKVRYESRKRQAENRPRVKGQFVRQVHGELPVADTGSY 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05425 639 ProSiteProfiles Response regulatory domain profile. 22 140 IPR001789 GO:0000160
Trre13g05425 639 SMART REC_2 21 136 IPR001789 GO:0000160
Trre13g05425 639 Gene3D - 21 262 - -
Trre13g05425 639 PANTHER TWO-COMPONENT RESPONSE REGULATOR 21 197 IPR045279 GO:0009736
Trre13g05425 639 MobiDBLite consensus disorder prediction 166 212 - -
Trre13g05425 639 Pfam CCT motif 584 626 IPR010402 GO:0005515
Trre13g05425 639 MobiDBLite consensus disorder prediction 459 500 - -
Trre13g05425 639 ProSiteProfiles CCT domain profile. 584 626 IPR010402 GO:0005515
Trre13g05425 639 Coils Coil 596 616 - -
Trre13g05425 639 Pfam Response regulator receiver domain 23 134 IPR001789 GO:0000160
Trre13g05425 639 MobiDBLite consensus disorder prediction 552 584 - -
Trre13g05425 639 MobiDBLite consensus disorder prediction 166 230 - -
Trre13g05425 639 SUPERFAMILY CheY-like 19 147 IPR011006 -
Trre13g05425 639 MobiDBLite consensus disorder prediction 213 228 - -
Trre13g05425 639 MobiDBLite consensus disorder prediction 542 586 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05425 Trre-Chr13 58793644 58798039 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05425 583 628 Response Regulator Gene Family AT5G24470 84.783 4.87e-19 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Trre13g05425 Response_reg 5.7e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05425 K12130 - gmx:100809490 725.702