Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05424 ATGGGTGAACCAACGATGCAGATCAACAATCATCATCATCATCACTCAGTCGACAAGTTTCTTCCTCCCACTATGCTTAGAGTCTTGCTCGTCGAAGCTGATGATTCTACCCGCCACATTATTTCTGCACTTCTTCGCAAATGCGGTTACAAAGTTGCTGCAGTTCGTGATGCCTTAAAGGCATGGGAGACATTGAAGAACAAATCATCTGAAATAGATCTCGTATTAACAGAAGTGGAGTTGCCATCAATATCTGGTTTTTCACTACTTACTTCAATCATGGAGCTTGACAATTGCAAAAACATTCCTGTCATAATGATGTCTTCTAACGATTCAGTTAGCACGGTGTTCAAATGCATGCTAAATGGGGCCGTCGATTTTCTCATTAAACCTGTTCGGAGGAATGAGCTTAGGAACTTGTGGCAACATGTGTGGAGAAGACATACTATTAGCATGCCTCCTCAAAATATAACATTTCCACAGAATAAACTTGATGTTGCTGCAGAAAACAATGCTGCAAGCAATAATTCTAGTGGTTCTGTGGCTTCCACTCAAAAAAATGTTGAATGCAGCGAAAAAACTAGTGAGGCTCAAGATATGTCCCAGCTGAAGAGTTCTTCATGTTTGAGCAATACCAGCCAGGCAAAGCACGAAAATTCTACCAGATATGAAAGGGAGTCTGCTGAGTATAACGATGAAACTGGAGAGAAATCAACTATAATAGCTTCTAAAGGTGCAGGGTATGACAAAATTTCAACAGGTTTAAGGCTTGGTCAAAGCTATGATTGTATAGAAACAGAAAACCAAGATGAAGTGTTAAAAACAGAGTTTGGCAAAGCCAATCCTCATACGAATTCAAAGATTCATCAATGGAATGATGAAATAGAAGAACATTCTGCTGGAGCTATTGACTTGATGGCTACTTTTCAGAATCTTCCAAAGAGCAGTTATGCAGATTGTCGTTTCAACGCTGGTGGTAACACAGCCAATTTTGATACACAATTGGATCTTTCTTTACAAAGAGATTTTCCTGGAAGCTCACCTAAACCTACCATTGAAGAAAGGCAAATATTGAATCATTCAAATGCTTCTGCGTTTTCTTTGTATGGCAGCAGTACATTGTTGAAGCCTTTATTTCCAACAAACAATTCGCATGAATCACAAAAATTATCGGAAAATACAAATATTGGTCATCAGTATGATATTAAAAAACTAAAGCAGGAAAATATCACTTATCTAGCAATTGGTCAGCCTGAACAAGTTGATGCAAAATTTCTTAACAGTCAACTTAAATTCTTTCCTACCACCGGGTCTGCTTCTGATAATAAGTCTATGGAACATGATGTTTTTCATTCTATGTTTGATGCACAGTCAGGTATGCATCCCACATGGACACCAAAATCAGTGTTCCAAAAAGAGACTTCTCCATTTCCCTCAAGTATTTCCTCCCACTCCAACCCTAAAAGTCAGAACTCAGAACCTCGCCACTGGTCGGATGATGCCACCTATACTTGTGATCAAAATGTAAATGATCAAAGCAATATAGATTGTGACGAATCTCCATCTAACGGTCAAAGTTGTGGTACAAGTTTTTACCATGATGTGGAAAATTGCAACACTAGTGGTGTATGTGAAGAAGGCATAGGAAGCGGAAGTGATGGAAATGCCCCTTCAGCAGTTGTAGGCAAGAACAACGCTGAAAATTCTATGAGCAATGATCACTATGATGGGCTTAGAGGCACAAATTCTCATCGCACCAGCCAAAGAGAAGCAGCTCTAACGAAGTTTCGACTGAAGCGAAAAGACAGATGCTATGACAAAAAGGTCCGATATGAAAGCCGGAAAAGACAGGCAGAGAACCGCCCCCGGGTGAAAGGGCAGTTTGTTCGCCAAGTACATGGTGAACTTCCAGTAGCTGATACCGGAAGTTACTGA 1935 0.401 MGEPTMQINNHHHHHSVDKFLPPTMLRVLLVEADDSTRHIISALLRKCGYKVAAVRDALKAWETLKNKSSEIDLVLTEVELPSISGFSLLTSIMELDNCKNIPVIMMSSNDSVSTVFKCMLNGAVDFLIKPVRRNELRNLWQHVWRRHTISMPPQNITFPQNKLDVAAENNAASNNSSGSVASTQKNVECSEKTSEAQDMSQLKSSSCLSNTSQAKHENSTRYERESAEYNDETGEKSTIIASKGAGYDKISTGLRLGQSYDCIETENQDEVLKTEFGKANPHTNSKIHQWNDEIEEHSAGAIDLMATFQNLPKSSYADCRFNAGGNTANFDTQLDLSLQRDFPGSSPKPTIEERQILNHSNASAFSLYGSSTLLKPLFPTNNSHESQKLSENTNIGHQYDIKKLKQENITYLAIGQPEQVDAKFLNSQLKFFPTTGSASDNKSMEHDVFHSMFDAQSGMHPTWTPKSVFQKETSPFPSSISSHSNPKSQNSEPRHWSDDATYTCDQNVNDQSNIDCDESPSNGQSCGTSFYHDVENCNTSGVCEEGIGSGSDGNAPSAVVGKNNAENSMSNDHYDGLRGTNSHRTSQREAALTKFRLKRKDRCYDKKVRYESRKRQAENRPRVKGQFVRQVHGELPVADTGSY 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05424 644 Gene3D - 26 267 - -
Trre13g05424 644 SUPERFAMILY CheY-like 24 152 IPR011006 -
Trre13g05424 644 MobiDBLite consensus disorder prediction 557 589 - -
Trre13g05424 644 MobiDBLite consensus disorder prediction 464 505 - -
Trre13g05424 644 MobiDBLite consensus disorder prediction 171 235 - -
Trre13g05424 644 Coils Coil 601 621 - -
Trre13g05424 644 ProSiteProfiles Response regulatory domain profile. 27 145 IPR001789 GO:0000160
Trre13g05424 644 ProSiteProfiles CCT domain profile. 589 631 IPR010402 GO:0005515
Trre13g05424 644 MobiDBLite consensus disorder prediction 218 233 - -
Trre13g05424 644 MobiDBLite consensus disorder prediction 547 591 - -
Trre13g05424 644 Pfam Response regulator receiver domain 28 139 IPR001789 GO:0000160
Trre13g05424 644 Pfam CCT motif 589 631 IPR010402 GO:0005515
Trre13g05424 644 PANTHER TWO-COMPONENT RESPONSE REGULATOR 26 327 IPR045279 GO:0009736
Trre13g05424 644 MobiDBLite consensus disorder prediction 171 217 - -
Trre13g05424 644 SMART REC_2 26 141 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05424 Trre-Chr13 58793644 58798054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05424 588 633 Response Regulator Gene Family AT5G24470 84.783 5.13e-19 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Trre13g05424 Response_reg 5.8e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05424 K12130 - gmx:100809490 725.702