Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05420 ATGGCTGCCAACGTTACTAGTAGTATGTCTCTCTCCTTCGCCGCGACAACCCCTTCTCTCCTTGGTGTTGTTAGTAGCTCCTCAAAACAATTGCTTCCATTTTCTGCGCTTCCTTATCCTTCTTTCTCCCTTCGCACCTCCAACCCTAACAGGGCTATTGTCGATGGACAAACGGCAATTGTGCAAGAACAACCAAACGACGTTGTTTTCGCGCCGGAAGAAGAAGAACAACAACCACGGAAGCTGCGAAATGCAACCCAACTTTACGTCTGCAACCTTCCTAGAACTTATGACACTCAACAGCTATTCGATTTGTTTTCTCCTCACGGAACCGTTCTATCTGCACAGGTTTGCCGGAATGTGGAGACAGGTCAGAGTAAGGGGAGTGCTTATGTCAAGATGGGATCTTATAATGCTGCTAAAAATGCAGTAGCTGCACTGGATGGATTGGACGTTGAAGGCCGCGAAATGCGGGTTAAATTTTCAGTTCAGATGAATACTAAGAAGAATTTTGTAGAGACATTTAACACAATGCCGTTGAAAACTCTATTCTATGAAGGTCCTCATAAGGTGTATGTAGGGAATCTTTCCAAGACTGCTGCACCTGAAGACCTGAGACATCTCTTTGGTAAATTTGGAAATGTGGCTAGTGTGAGGGTGTTGCAAGATTTGAAACTGGGGAAAAATCGTGTCTACGCCTTTGTCTCTTATCTTTCTCAGAGTGAACGCGACGCCGCTATGTCACTCAATGGAACTGAATTTTCTGGTCGAATTCTAGTCGTTAGAGGGAGCACGGAGAAGCCCAAAACATGA 813 0.4514 MAANVTSSMSLSFAATTPSLLGVVSSSSKQLLPFSALPYPSFSLRTSNPNRAIVDGQTAIVQEQPNDVVFAPEEEEQQPRKLRNATQLYVCNLPRTYDTQQLFDLFSPHGTVLSAQVCRNVETGQSKGSAYVKMGSYNAAKNAVAALDGLDVEGREMRVKFSVQMNTKKNFVETFNTMPLKTLFYEGPHKVYVGNLSKTAAPEDLRHLFGKFGNVASVRVLQDLKLGKNRVYAFVSYLSQSERDAAMSLNGTEFSGRILVVRGSTEKPKT 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05420 270 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 86 164 IPR000504 GO:0003723
Trre13g05420 270 Gene3D - 50 171 IPR012677 -
Trre13g05420 270 Gene3D - 181 270 IPR012677 -
Trre13g05420 270 PANTHER OS02G0815200 PROTEIN 30 264 - -
Trre13g05420 270 FunFam 30S ribosomal protein 2, chloroplastic 178 264 - -
Trre13g05420 270 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 191 258 IPR000504 GO:0003723
Trre13g05420 270 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 88 158 IPR000504 GO:0003723
Trre13g05420 270 SUPERFAMILY RNA-binding domain, RBD 50 168 IPR035979 GO:0003676
Trre13g05420 270 SUPERFAMILY RNA-binding domain, RBD 186 268 IPR035979 GO:0003676
Trre13g05420 270 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 189 266 IPR000504 GO:0003723
Trre13g05420 270 SMART rrm1_1 87 160 IPR000504 GO:0003723
Trre13g05420 270 SMART rrm1_1 190 262 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05420 Trre-Chr13 58780678 58781887 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05420 81 267 Eukaryotic Initiation Factors Gene Family AT1G22760 29.688 6.64e-17 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05420 - - tpra:123889530 395.201